Gasterosteus aculeatus (three-spined stickleback): 120825942
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Entry
120825942 CDS
T07457
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120825942 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120825942 (smarcc1b)
03036 Chromosome and associated proteins [BR:
gat03036
]
120825942 (smarcc1b)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120825942 (smarcc1b)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120825942 (smarcc1b)
PBAF complex
120825942 (smarcc1b)
GBAF(ncBAF) complex
120825942 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
120825942
NCBI-ProteinID:
XP_040043737
LinkDB
All DBs
Position
X:complement(10818652..10826025)
Genome browser
AA seq
950 aa
AA seq
DB search
MATMSGGTNLGMHGTNQASSGTSAHRKKYSSPSARFWESPDTLAQLEVVRQWIGKHYKKY
VLVDPPSCQALAGMTLQLLQFQEDAFGRQATGPALTKLPTQCFLDLRPGGGLCHILGTAY
KFKAEQGWRRFDLQNPSRTERNVEMFGAIERVLTQSNCMALPVVYVDPTLGPELASRLKD
IISKHKGTLTEDRTLASHHLYSSPASAEEGGWMRPVMRKDKHVLVHWGMHPDSYDSWLSS
SDVEGQVEEPPHSEKPWRVHASWVLDTDVFNEWMNEEDYCVDERNVPIIYRKRIHLRDDQ
DSKVTPSKKRRRSPSPHSEGRKKGKKGRRRGHQEEEPEEDLTKDMEDPTPVPNMEEVVLP
KNVNLKKDSENTPVKGGTMADLDELEEDFTGRDDEEMARLSEGDDNIPEQTHHIIIPSYT
SWFNNNSIHAIEKRALPEFFNGMNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRRNL
TGDVCAVIRVHAFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPLQ
VSASQHMLFFPERSKEKPPDCQNFGLRADIYTKKHPKTKGTSAGREWTEQETLLLLEALE
VYRDDWNKVSEQVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAFQPVPFIQSENPVM
STVAFLASVVDPRVASSAAKAALEEFSRVHQESVNKVPDSSNQPNKMESMDTEIIETNST
SHQVPLRADGLTVEPSLTNVEGVLVKRENAENILSEERDVRTDDDESLERGEVDEARVME
QDLVEGRVVTAAAAALASAATKAKHLAAVEERKVKSLVALLVETQMKKLEIKLRHFEELE
TIMDREKEALEQQRQQLLTERQTFHTEQLKQAEMKIRQQREQQGQPGFTMQHSALPPPAG
QPAPNRMMPGGGNAQAMAPRHPGAPNGMYPSSQPDGTAPAQPGPPASTHS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggccacaatgtccggtggaacaaacctcggcatgcacgggacaaaccaagccagctcc
gggacatccgcacaccgtaaaaaatacagcagtccgtccgccaggttctgggagagtccg
gatactttagcccaactggaggtggtgcgacagtggatcgggaagcactacaaaaagtat
gtgctggtggatcctccatcgtgtcaggctctggctggaatgactctgcagcttctccag
ttccaagaggatgcctttggcagacaagccaccggtcctgctctcaccaaactgcctaca
caatgcttcctggacctgcggccagggggtggactctgccatattcttggcactgcctat
aagtttaaggctgagcaaggctggcgtaggtttgacttgcagaatccgtcaagaactgaa
agaaatgttgagatgtttggtgctattgaaagagtcctgactcagagcaactgtatggcg
ctgcctgtggtatatgtggacccgacactgggtccggagctggctagcagacttaaggat
attatctccaaacacaaggggactctcactgaggaccgaacgctcgccagtcaccacctc
tactcctcgccagcttctgcagaagaaggtggttggatgcgtcctgtcatgcggaaagac
aaacatgtcttggtacactggggcatgcaccctgacagttatgacagttggttgtcctcg
agtgacgtggaaggacaggttgaagagccaccgcattcagaaaagccgtggcgggtccat
gctagctgggttctggacacagatgttttcaacgagtggatgaacgaagaagactattgt
gtggacgagaggaatgtgccgatcatttaccgcaagcgcatacacctcagagacgaccag
gactccaaagtcaccccctccaaaaagagaagacgctccccctctcctcactccgaaggc
agaaagaaaggaaagaaggggcggaggcgcggacatcaggaggaagagccagaagaggac
ttgaccaaagacatggaggaccccacccctgttcctaacatggaggaggttgttctaccc
aagaatgtcaacctgaagaaggacagtgagaatactccggtcaaaggagggactatggct
gacctggatgagctggaggaggatttcacaggaagggatgatgaggagatggctcgcctg
tcagaaggagacgacaacatcccagaacaaacccatcatattataataccaagttacacg
tcttggttcaataacaacagcattcatgcaatagagaaacgcgcattgcctgaattcttt
aatggaatgaataaatccaaatcgccagaaatctacctggcgtaccgtaacttcatgatc
gacacgtaccggctcaacccccaggaatacctcagctcaacatcctgcagacgcaacctc
accggggacgtctgtgctgtaatcagggttcatgcatttttggagcagtggggtttgatt
aactaccaggtggatgcagaaagcaggcccctccccatgggacccccgcccacccctcat
ttcaacgtgctagctgacacgccgtccgggctcgcccccctacaacacaaacccctgcag
gtgtcagcctcgcagcacatgttgtttttcccagaaaggagcaaagagaagcctccagac
tgccagaactttggtctgcgcgccgacatctacaccaagaaacaccctaagactaaaggt
acaagtgcaggaagggaatggacggagcaagagacgctcctgctattagaggccttagag
gtctacagagacgactggaacaaagtatccgagcaggtgggctccagaacgcaggacgag
tgcatcctccacttccttcgcctgccaatagaagacccgtatctagaagactcctcggcc
tcccttggcccactggcgttccagcctgtgcctttcatccaatcggaaaaccccgtcatg
agcactgtggcgttcctagcgtccgtggtggacccacgagtggcttcatccgcagctaag
gccgcactcgaggagttctccagagtgcatcaagagtcagtgaataaagtccctgactcg
tccaaccagcccaacaaaatggagtcaatggatacagagataattgaaacaaactccacc
tcccatcaggttcctttaagggcagatgggctcacggtggaacccagtttgaccaatgta
gagggagtcctggtcaagagagaaaatgccgaaaacatactttcagaggagagagatgta
aggacagatgacgacgagagcctcgagcggggagaagtggatgaggcgagagtgatggag
caggatctggtggagggcagagtcgtcacggcagcagcagctgctctggcctcagctgcc
acaaaggccaagcacttggcagcagtagaggagaggaaggtcaagtccctggtggctctg
ctggtggagacccagatgaagaagctggagattaaactgaggcactttgaggagctggag
accatcatggaccgcgagaaagaggctctggagcagcagcggcagcagctcctcacagag
agacagacgttccacactgagcagctgaaacaggccgagatgaagattcgccagcagagg
gagcagcaggggcagccgggattcactatgcagcactcggcattgcctcctcctgcgggc
cagccggcgcccaaccgaatgatgccgggtggaggaaacgcccaggcgatggccccccga
caccccggggcgcccaatggcatgtacccgtcctcgcagcccgatgggacggcaccagct
cagccgggtcctccggcgtccactcacagctga
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