Gasterosteus aculeatus (three-spined stickleback): 120826183
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Entry
120826183 CDS
T07457
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120826183 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120826183 (skiv2l)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120826183 (skiv2l)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120826183 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
120826183 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
120826183
NCBI-ProteinID:
XP_040044192
LinkDB
All DBs
Position
10:complement(5375680..5387445)
Genome browser
AA seq
1246 aa
AA seq
DB search
MDRINVPPPGPTDLPLSLLEMGCSGRFELITHPSPDQPLLPQSTLPHGLPPTSLSLDREV
EKQFLRDAAWLPIHDTDLAFQKFLKVAQREVNVDSLINSAHSALHSGISVVRDPTTGMLL
DFTEVLLENTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFHPGGMEELSLEQIKKRSDLE
EDIDFENDLLRVPPGLKAGMDFTDKEAKVAKAEVNLMSLLSTLEDIPVLQPAVEETEESK
EKEEAPKLPRTNSLEDLGVKDVVSSSTLSKAGKDDKSKPNENPEENVKWAIPVNINAPCN
NFYKLIPNPAFKWPFELDVFQKQAVLKLEAHESVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRIKKKH
IYVISTMKRPVPLEHYLYTGNSTKTQKEMHLLMDATGNFLTKGYYAAVDAKKERTSKHAQ
SFGTKSTSHNTTASQDRSVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDMTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILVMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSESH
RDTQSHEKRISQLKQMVSSLPPLDTEGQLSDMLPYYHTVTELRTTTEALQCAILESVNGL
KALSVGRVVVVNNKQHLNALGVILQVSSDAVNRTFTALVICEKGNEEEDGKGNNNKAFPH
LYNTALFIPEGPCSHTVQKLKLHDISAITVKTLKVIPDRIIDNYSKRQQPRFRLDPPGQA
ISTATQELLRLAEANPNGMAALDPVNDLQLKSVDVVEDSMRLRVLQSSLREFNCIHSPTF
AEQFARVDERMKVQEELDRLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDSGGAVQLKGRV
ACQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQKTQVEPHITSTLQEAIDRVLS
VAKRIGELQRECGIPQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTVVRCI
QRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggatagaataaatgttccccctccgggccccacggacctgccgctgtccctgctggag
atgggatgctctggcaggttcgagctcatcacacacccctctccggaccagcctttactt
ccacagagcacgctcccacatgggcttcctcccaccagcctgagcctggacagagaggta
gagaaacagttcttaagggatgctgcctggcttccgatacacgacacagaccttgccttc
cagaagtttctcaaggtggctcaaagagaagttaatgtcgactctttaatcaactccgct
cactcagcccttcactctggcatctctgttgtcagagatccaacgacagggatgctgctg
gacttcacagaggtgttactggagaacactggcctgtcggcaaagaactcactttcactg
caacgccaaccagggcctccttcagagagcctccgaggaagcaacaccaactaccccttt
caccccggtggaatggaggagctttctctggaacaaattaagaagagatctgatctggag
gaggacatcgactttgagaatgatttactcagagttccacctggacttaaagctgggatg
gatttcactgacaaagaggccaaagtagcgaaagcagaggtcaacctcatgtcccttctg
tccacattggaggacatccctgtcttgcaacctgcggtagaagagacagaggagagcaaa
gaaaaagaggaagctcctaaactacccagaaccaacagccttgaagaccttggagtgaag
gatgttgtgtcatcctcaactctctcaaaggcaggaaaagatgacaaatcaaagccaaat
gagaacccagaggaaaatgtgaagtgggccatccctgtcaacataaatgctccctgcaat
aatttctataaactcatacccaacccagcattcaagtggccgtttgagctggacgtcttc
cagaaacaggccgtgctgaagctggaggctcacgagtctgtgtttgtagccgcgcacacg
tcagctggcaaaacagtggtggccgagtacgccatcgccctctcgcagaaacacatgaca
aggaccatctacacctctcccatcaaagccctgtccaaccagaagttcagagacttcaaa
accacctttggagacgtcggcctcctgacgggcgacgtccagctcagtcccgagtcctcg
tgtctcatcatgaccactgagatcctcaggtccatgctttacaacggctcagaggtcatc
agggacttggagtgggtgatcttcgacgaggttcactacatcaacgatgcagagagaggg
gtggtgtgggaggaggttttgatcatgctccccgatcacgtcagcattattctccttagt
gccacggtgccgaatgctgttgagtttagcgagtggattggtcggataaagaagaagcac
atctacgtgatcagcacaatgaagagacctgtgcctttggagcattatctgtacaccggc
aacagcaccaagactcagaaagagatgcacctgctcatggacgctacagggaactttctc
actaaagggtactatgcagctgtcgatgccaagaaggagcgtaccagcaaacacgcccaa
tcgtttggcacaaaaagtacttctcacaacaccacggccagtcaggaccgatcggtgtgg
ctcactctcctgcacttcctgtcccagcgccagcagacgccggtggtcgcgttcaccttc
tcaaggacgcggtgtgacgacaacgcccgctcgctcgattcgatggacatgaccacctca
atagagaaggccgagattcactctttcttccagaagagtctgagtcgcctgcggggagga
gacagacagctgcctcagatcttggtcatgagggacctgttgaagaggggaatagcagtc
catcatagcgggatcctgccgatactgaaggaggtcatcgagatgctcttctcacgaggt
ctcgtaaaagtgctgtttgctaccgagacgtttgctatgggagtgaacatgccggccagg
actgtggtgttcgacagcatcaggaagcacgacgggaccggctttagaaacctgctgccg
ggtgagtacatccagatggcgggccgggcaggcaggcgaggtctggacgccaccggcacc
gtcatcatcctgtgtaaggccggagttcacgagatggcggatctgcatgtcatgatgctg
ggtaaacctacaatcctccagtcccagttcagactgacctacacgatgatcctcaacctg
ctgcgggtcgaagccctgcgcgtgaccgacatgatgaggcgcagcttttctgagagccac
agggacactcagtcccacgagaagaggatcagccagctgaagcagatggtgtcttctcta
cctcctctggacacagaaggccagctgtcggacatgttgccgtactaccacacggtgacg
gagctacgaaccaccacagaggccctccagtgcgctatcctggagtccgtcaacgggctg
aaagcgctgtctgtgggtcgcgttgtggttgtgaacaacaaacagcatctcaacgctctg
ggcgttatcctacaggtgtcaagtgacgcagtgaatcgcaccttcacagctctggtcatc
tgcgagaagggcaacgaggaagaggacggaaaagggaacaacaacaaggctttcccccac
ctctacaacacggctctcttcatacctgaaggcccttgcagccacacggtccagaagttg
aagcttcatgacatctcagccatcacagtgaaaaccctgaaggtgattccggaccggatc
atcgacaactacagcaagaggcagcagccacgattcagactcgatccgcctggccaagcc
atctccacggcgacccaggagctcctgcgattggccgaggccaaccccaacggcatggcg
gccctggaccccgtaaacgacctccagttaaagagcgttgacgtggtggaggactccatg
aggctgcgtgtgctgcagagcagcctccgagagttcaactgcatccactcgcccacattt
gcagagcagtttgctcgggtcgatgagaggatgaaagtgcaggaggagctggaccggctg
ctgttcctggtttcggaccagtctctgtctctgctgcctgaataccaccagaggatcaag
gtgctgcagtcgctccagtacgtggacagtggcggggcggtgcagctgaagggccgcgtg
gcctgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctg
agcccgctggcgcccgaggagagcgccgccctgctgtcctgtttggtattcacgcagaaa
acgcaggtggagccgcacattaccagcacactgcaggaggccatcgatcgcgtgctgtca
gtggccaagcgtatcggagagctgcagagggagtgtgggataccacagacagctgaggag
tttgttggccagttcaagtttggcctgacggaggtggtctactgctgggccagaggcatg
ccgttcgcggagatcgcccagctgacggacgtccaggagggcacggtggttcgctgcatc
cagcgcctggacgaggtgctgaaggaggtgcgacaggccgcccgcatcgtgggggactcc
gtcctagggagcaagatggagaaggcgtccctggccatccgcagggacatcgtcttcacc
gcctccctctacacccactga
DBGET
integrated database retrieval system
