Gasterosteus aculeatus (three-spined stickleback): 120826234
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Entry
120826234 CDS
T07457
Symbol
prdm1b
Name
(RefSeq) PR domain zinc finger protein 1 isoform X1
KO
K24501
PR domain zinc finger protein 1 [EC:2.1.1.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120826234 (prdm1b)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120826234 (prdm1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-H2C2_2
zf-C2H2
SET
zf-C2H2_4
zf-C2H2_6
C2CH-3rd_BIRD-IDD
STL11_N
Zf-C2H2_ZNF451_C
zf-C2H2_jaz
zf-met
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
120826234
NCBI-ProteinID:
XP_040044279
LinkDB
All DBs
Position
X:5103820..5114119
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AA seq
722 aa
AA seq
DB search
MKLESPLGDMSGWREVDFVLNCTYIVPDQVSDPSFSLPKAMTSIPRNLTFEYSTDNEVMG
VFSKEYIPQGTRFGPLQGVIYTKDNVPKQANRKYFWRIYSNEQLQNFIDGYDVHRSNWMR
YVNPARSLAEQNLVACQNGRDIYFYTIGPVEPNQELLVWYSQEFAQRLCGQQADMKPKYT
NSDEDREPECPKQHLPQTTWSTDRTKEEVKEERDEDGEENIDVEMLERDTPPDTPDTPDN
HIMDFSKKVETEASAGDTEDRGIIPSPEPQHGERGPALNHRYSPDPQPAVPPQQRNLPLH
LHGLYREGVSSYPIYPQSRPIHPNYQLLPPYGAHYPRLLLPSYSPPFPGMLPSRGYLRYN
SYLGADGPQYPPMGQANLLPVSLPYPPPPSQGGLKELKANVSPPRGAPATPELSPLPKPD
GQHHPTEQSPSGFEEAMNLSLDTIKSKAATRNGPGHKSLPYPLQKQNGKIKYECNICSKT
FGQLSNLKVHLRVHSGERPFQCNLCKKSFTQLAHLQKHHLVHTGEKPHECQVCHKRFSST
SNLKTHLRLHSGEKPYQCKLCNTKFTQYIHLKLHRRLHSSRDRPYRCQLCAQAFFHRFSL
RIHQCSCCLANSNMPVDVHTKQMVERFDASQEADMLTEAASAMQVEEAVERWLDRTLEGE
GKEDQKEATLLLKALAAAINSPATPVAQSATPASHHSPPLACQERASVVHLHHRPTVKTE
GQ
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaagctggaaagcccactaggagacatgagcgggtggagggaggtggactttgtcctc
aactgcacctacattgtgccagaccaggtgtcggaccccagtttcagcctgcccaaagcc
atgacgtccatcccacgcaacctcacctttgaatacagcacagacaacgaggtgatgggc
gtcttcagcaaagagtacattcctcaggggactcggttcggccctctgcaaggggtcatc
tacaccaaagacaacgttcccaaacaggccaacaggaaatacttttggcggatttacagc
aatgagcagctccaaaactttattgacggctatgacgtccacaggagcaactggatgcgt
tacgtcaacccggcccggtctctggccgaacagaacctggtggcgtgccagaacggccgg
gacatctacttctacaccattggaccggtggagcccaatcaggagctgctggtctggtac
agccaggagtttgcccaaaggctctgcggccagcaagccgacatgaaaccgaaatacaca
aactctgatgaagaccgagagccggagtgtcccaaacagcacctacctcagacgacatgg
agtacagacagaacaaaggaggaggtgaaggaagagagggatgaggatggagaggagaat
atcgacgtggagatgttggagagagacacaccgcctgacacgcctgacacgcctgacaac
cacatcatggatttcagcaaaaaggtcgagacggaggcgagcgccggggacacagaggac
cggggcataattccatcccctgagccccaacacggagagagaggcccggccttaaatcac
cggtactcaccggatcctcagcccgcagtcccgccccagcagcgaaatctccctctccac
ctccacggcctctacagggaaggtgtctcatcctacccgatttacccccaatccagaccc
atccaccccaattaccagctgcttcctccctacggcgcgcactatcctcgcctcctcctc
ccctcgtactcccctccctttcctggaatgctgccctcaagaggatacctccgatacaac
agctacctgggcgccgacggccctcagtacccacccatgggccaagctaatttactgccg
gtgtccctcccctaccctcccccgccttcacaggggggcctgaaagaactcaaagcaaac
gtgtcgccgccgcgaggcgcgccagccacgccagagctctcccctctccccaaacccgac
ggtcagcatcatcccaccgagcagtccccctctgggtttgaggaagccatgaatctaagc
ctggatacgatcaaaagcaaagcggcgacacgcaacggccccggccacaaatcgctgccc
tacccactgcagaagcagaatggaaagatcaagtacgaatgtaacatctgctcaaagact
ttcggacagctgtcgaacctcaaggtccatctccgagtgcacagtggcgagagaccgttc
cagtgtaacctgtgtaaaaagagcttcacgcagctggcgcacctccagaaacaccacctt
gtccacacgggggagaaaccacatgaatgtcaggtgtgtcacaaacgcttcagcagcacc
agcaacttgaaaacacacctccgcctccactctggggagaaaccctaccagtgtaagctg
tgcaacaccaagttcacccagtacatccacctcaaactgcaccgccgcctccacagcagc
cgcgatcgtccctaccgctgccagctctgcgcccaggccttcttccaccgcttttccctc
cgcatccaccagtgcagctgctgcctggctaactccaacatgcccgtcgacgtacacacg
aagcagatggtggagcgattcgatgccagccaagaggccgacatgctcacagaggcggcg
tcggcaatgcaggtggaggaggcggtggagcgctggttggatcgcaccttggagggggag
ggaaaggaggaccagaaggaggcgaccctactgctgaaagccctggcggcggcgattaat
tcaccagcaacgcccgtggcccaatcagcgacacccgcgtcacatcacagccctccactg
gcctgtcaggagagggccagcgttgttcacctccaccaccggccaacagtgaagacagaa
ggacagtga
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