Gasterosteus aculeatus (three-spined stickleback): 120826281
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Entry
120826281 CDS
T07457
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
120826281
NCBI-ProteinID:
XP_040044353
LinkDB
All DBs
Position
X:complement(15495125..15532249)
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AA seq
1626 aa
AA seq
DB search
MRQNQTKAEMELRLGFRITLVILALALSGERVEAQRAGCKNVHYDLAFILDTSSSVGKDN
FEKIRQWVANIVDSFDVAPEKTRVAVVRYSDRPTIEFTLGRHGTLEDVKQAARNIRYLGG
NTMTGEAINYTTANIFTERSGARPTARGVQRVAILLTDGRSQDYVLESSKAAAKAGIRMF
AVGIGEALKVELEEIAAEPKSAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRF
KPDSSSYGLEEVPGFNLMEYFNVRDVLGTKEDEGQSSYVRLGTMPIVQQTEDVFPQGLPD
EYAFVTTFKFRKTSRREDWYLWQVYDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVF
KNHEVDNLFDRNWHKIALSVEAKSVSLYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDS
VPIDFDLQRMMIYCDSKQAELETCCDLPNGPCPKKVVTEAPPVEIPDPTPTSVEQKKGPE
VNCSCPAGDKGAIGVPGVAGPKGAKGDAGSKGAIGAPGTRGEKGDTGKVISVKGDRGEKG
DTGRIGLTGAPGQKGEKGTGGEPGIDGLSGDKGDKGEGGLAGDPGLPGLAGQKGIQGDEG
IPGTPGPKGVPGESGGKGEKGISGDRGGAGFDGLPGKPGAPGKDGLRGLVGASGPSGVKG
IKGERGLPGLPGDVFQKEGLRGEKGDAGPPGPPGPGGPEGPQGPQGLQGLRGEPGERGKK
GDAGFHGVDGLPGSAGPQGPPGPAGSKGHTGPPGLPGEIGRSGKEGEAGKPGLPGKDGLD
GLPGNDGTMGPRGERGADGFAGKPGPKGDDGPPGPRGPAGDRGEPGTPGQTGGDGVRGDR
GVPGERGQDGPLGPKGEKGDKGNEGARGLPGIPGNVANVIPEPGEPGKPGEKGAKGDQGN
PGEMGLRGLPGEQGFKGPVGPVGAKGDAGLTGATGRVGDPGPPGLAGAQGARGLPGSVGI
PGIIGPPGPVGQRGDKGETGKPGQSGVPGPPGDGGLTGPPGPPGKGKDGQNGDPGPQGIQ
GPPGLKGQTGPRGEVGPPGDRGPAGEGRAGPPGPSGSDGDAGTPGLRGLPGVAGPQGPAG
HNGLPGRPGDKGSPGDPGKAADLSELDLKDVCSDCPAGPPGPPGLPGVPGDKGHQGPPGK
NGQDGYQGPPGTAGAQGPPGADGGKGVKGDRGPPGGPGDKGEKGHPGPPGHPGTPGLMGT
PGNDGLPGPVGPSGPTGEKGKEGLSGIQGPPGLPGLIGEPGKMGKDGRPGEPGEPGKQGE
PGPLGNPGLRGPSGFKGHRGEPGAPGAKGEDGKPGSSGRDGKPGKEGSMGPPGREGLSGP
RGEPGKPGEPGPSGKAGLAGTPGLSGNKGEAGNPGLPGFSGPKGPAGPPGPIGPEGKQGM
PGRVGDRGFKGDKGDSGVKGDKGQSGDPGMPGNPGPPGRKGHTGMMGMSGPPGELGAPGP
QGPSGNPGMPGQRGESVSLEQMRRLIQEELAKQLDAKMAYLMAQIQPAHVKSTAGRPGPP
GPSGKDGNAGRPGPPGEPGVPGQNGGEGSRGPMGPKGDRGARGERGEPGVGERGAQGPSG
PIGPAGLPGYGKDGGPGQAGAQGEPGNPGPHGQPGPPGPTGQCDPSQCAYYASLAQRPHT
KNVKGT
NT seq
4881 nt
NT seq
+upstream
nt +downstream
nt
atgagacagaaccaaacaaaggcggagatggaattacgactgggatttaggatcacgttg
gtcatcttggctttggctctatccggcgagagggtggaagctcagagagcaggatgtaaa
aacgtccactacgacctggcgttcatcttggatacctcttccagcgttgggaaagacaat
tttgagaaaatcaggcaatgggtggccaacattgtggactcttttgacgtggcaccagag
aagacaagggtagccgtggttcgctacagcgacagacccaccatcgagttcaccctgggc
agacacgggaccctggaggatgtgaagcaagccgcccgcaacatacgctacctgggggga
aatacgatgaccggggaggccatcaactacaccaccgccaacatcttcaccgagcggagc
ggggccaggccgacggccagaggcgttcagagggtggccatcctcctcacggacggccgg
agccaggactacgtcctggagtcctccaaggcggccgccaaggccggcatcaggatgttc
gccgtgggcatcggggaggcgctgaaggtggagctggaggagatcgcggccgagccaaag
agcgcccacgtcttccacgtgaccgacttcaacgccatcgacaagatccgaggcaggctg
aggaggaggctgtgcgagaatgtcctgtgtcccaacatgaaggtccaacctgatcggttt
aagcccgacagcagcagttacggccttgaagaggttccagggttcaacctgatggagtac
ttcaacgtgagagacgttctgggaactaaggaggacgaagggcaaagttcttacgttcgg
ctcggcaccatgcccattgtacagcaaacagaggacgtgtttcctcaagggttgccagat
gaatatgcctttgtgacgacattcaaattcaggaaaacctcaagacgtgaagattggtac
ctgtggcaggtttatgacaaatatggaatcccacaggtgtccatccgcctggacggggag
aacaaggcggtggagtacaacgccgtcggcctgacaaaagacgccgtcagggccgtgttc
aagaaccacgaggttgacaacctgttcgaccgcaactggcacaagatcgccctgagtgtg
gaggccaagtccgtgtctctgtacctggactgcaaacacatccagactctgcccatcgaa
gacagggaggacatcgacatccaggggaagaccgtgatcgggaagaggctgtacgacagt
gtgccaatcgattttgacctccagaggatgatgatttactgtgattccaagcaggcagag
ctggagacctgctgtgatttacccaacggaccttgccccaagaaagtcgtgacagaggcc
ccccccgtggaaatccccgatccaacacccaccagtgtggagcagaaaaaaggccctgaa
gtcaactgttcgtgccctgctggagataagggagcgatcggcgtgcccggtgttgcaggt
cctaagggtgcaaagggtgacgccggctctaagggcgccatcggagctccgggaaccaga
ggagaaaagggcgacactggcaaagtaatatctgtcaaaggtgacagaggcgagaagggt
gacacaggcagaatagggttgacaggtgctcccggacagaaaggagagaaggggacgggt
ggtgagccgggtatcgatggcttatccggagacaagggagacaaaggtgaagggggactg
gcaggggatccaggtctaccgggtctagctggacaaaagggaattcaaggggatgaagga
attcccggcaccccaggaccgaaaggtgtccctggcgaatccggtggaaaaggcgaaaaa
ggaatttcgggagacaggggtggggcaggtttcgacggattacctggcaaacccggtgct
cctgggaaggatggcttgagaggactggtcggcgcatccggacccagcggagtcaaaggc
atcaagggggagagaggccttcccggattacctggggatgtgtttcaaaaagaaggctta
cggggtgaaaagggggatgctggacctcctgggcctccagggcccgggggccccgagggg
cctcaaggtcctcagggtctacagggacttcgtggggaacctggagagaggggaaagaaa
ggagatgctggattccatggagtggacggacttcctggatccgctggtcctcagggtcca
cctggccctgcaggaagcaaaggacacactggacctcctggtctgcctggtgaaattgga
cgttcaggcaaagagggagaggccggaaagcctggtcttcctggtaaagacggtctggac
ggtcttcctggaaacgacggcactatggggccccggggggagcgcggagcggatggtttt
gccggcaagcccggacctaagggtgacgatgggcctcccggcccgagaggacctgcaggg
gatcgaggagagcctggtacccccgggcagacaggcggggatggagttagaggggacagg
ggtgttccgggagaaagaggacaggatggaccactcggaccaaaaggggaaaagggagac
aaggggaacgagggagcgaggggactacctggcatcccagggaatgtggcaaatgtgatt
cctgagcctggtgaacctggaaaacctggagagaagggagcgaagggagatcaagggaac
ccaggagagatgggtctgagaggtttacctggcgaacaaggcttcaagggaccagttgga
ccagtgggcgcaaaaggtgacgctggactaacgggagcgacgggacgcgttggagatcct
ggtccacctggactagccggtgctcaaggtgctcgtggattacccggcagtgtgggcata
ccagggatcattgggcctcctggtccagtcggacagagaggagacaagggtgaaacgggt
aaaccaggacaatcaggtgtcccgggcccacctggagatggcggtttgactggacctccc
ggaccaccaggaaagggcaaagacgggcaaaacggggatccaggaccacagggaattcaa
ggacccccggggctgaaggggcaaaccgggccccgaggagaagtggggccacccggggac
aggggccccgcaggggaaggcagagcgggaccacctgggccttcaggaagtgacggtgac
gctggaactccgggcctcaggggcctgccgggagtcgccggtcctcagggcccagcggga
cataatggtttaccaggaagaccaggagacaagggatcaccaggagatcctggaaaagca
gcagacctgtcggagctggatctgaaggacgtctgctcagactgccccgcgggcccacct
ggaccaccaggtctcccgggagtcccaggggacaaaggacaccagggacctccggggaaa
aacggtcaagacggctaccaagggccgccaggaacagccggagctcaagggccccctgga
gccgacgggggaaagggtgttaaaggtgatcgaggacctccgggaggccccggagacaaa
ggagaaaagggtcacccaggaccccctggtcatccgggcacccctggcttaatgggcaca
cccggcaacgacggactgcctggacccgtcggcccctcgggacccaccggagaaaagggc
aaagaggggctcagtggaatccaggggccaccaggtcttcccggcttgattggtgagcct
ggaaaaatgggaaaagatggcagaccaggtgaaccaggagagcctggcaagcaaggtgag
cctggaccactaggaaacccggggctcaggggaccctcaggcttcaagggccacagagga
gagcccggggctccaggagctaagggagaagatgggaagcccggatcatcggggcgtgat
ggcaaacccgggaaagagggctcgatgggacctccaggcagagaaggcctcagtggacca
agaggagagccgggcaagccgggggaaccggggccatcgggaaaagcaggtctcgctgga
acgccaggccttagcggaaacaagggagaggccggcaacccgggattaccaggcttcagc
gggcccaaaggccccgcgggtccacctggtccgattggcccagaaggcaaacaggggatg
ccaggcagagttggtgatcgtggcttcaaaggagataagggagattcaggcgtgaaggga
gataaaggacaatcgggagacccaggcatgcctggaaaccccgggccccccggcagaaag
ggccacacagggatgatgggcatgtctggacctcccggagaattaggagccccggggccc
caaggaccttcggggaatcccggtatgccaggccaaagaggcgagtcggtgtcactggaa
cagatgagacggctcatccaggaggagctggccaaacaattagatgccaaaatggcttac
ctcatggctcagatccagccggcccacgttaagagtacggccggccgcccaggacccccg
ggcccttcagggaaggacggcaatgctggacgaccgggcccccctggagagcccggtgtg
cctggacaaaatggcggggaaggatccaggggacccatgggccctaaaggcgacagagga
gcaagaggagaaaggggggaaccgggtgtcggcgaaagaggagcgcagggaccctccggc
ccgataggtccagccggtctgcccggttacggtaaagacgggggccccgggcaagccgga
gcccagggagagccaggaaaccccggcccccacggtcaacccggacctccgggtcccacc
ggccagtgtgaccccagccagtgtgcctactacgccagcctggcgcagagaccccacacc
aaaaatgtcaaggggacctaa
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