Gasterosteus aculeatus (three-spined stickleback): 120826362
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Entry
120826362 CDS
T07457
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120826362
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120826362
03036 Chromosome and associated proteins [BR:
gat03036
]
120826362
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120826362
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120826362
mRNA degradation factors
5'-3' decay
Decapping complex
120826362
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120826362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
120826362
NCBI-ProteinID:
XP_040044493
UniProt:
G3NCV2
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All DBs
Position
X:4119218..4126831
Genome browser
AA seq
490 aa
AA seq
DB search
MATARTENVGPVIMGLNKQNGQLRGQTKPASVQPAPTTQAKALGAAKLAGGAAQDGGGIK
FGDDWKKSLKLPPRDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKNHIQALVMVPTRELALQVSQISIQI
SKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQIMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHLGLAINLITSEDRFNLKAIEDQLVTDIKPIPSSIDKSLYVAEFHTSGADCDVEEIEE
KPTGRQQDST
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgccagaacagaaaacgttggccccgtcatcatgggactgaacaagcagaac
gggcagctcagaggacagaccaaacccgcttcagtccagccagcacccacaactcaagca
aaggctttgggtgcagccaagctagcaggtggtgctgctcaggacggaggaggcatcaag
tttggagacgactggaaaaaaagcctaaagctcccacccagagacaaccgggtcaaaacc
tcagatgtcacgtccaccaaggggaatgagtttgaagattactgtctcaaaagggaactc
ctgatgggcatctttgagatgggttgggagaaaccttcccctatccaggaggagagcatt
cccatcgcgctgtccggacgggatattctggctcgggctaagaacggaacagggaaaagt
ggagcctatctcatcccactgctggagagaatagacctgaaaaagaaccacatacaagca
cttgtcatggtgcccacccgtgagctggctctgcaagtgagccagatctccatccagatc
agcaaacacctgggtggagtcaaagtcatggccaccaccgggggcaccaacctgcgggat
gacatcatgcgcctggatgaaaccgtgcatgttgtcattgcaacgcctggtaggatcctg
gacttgataaagaagggagtggccaaggtggatagagtccagatcatggtgatggatgag
gccgacaagctgctgtctcaggattttgtggtgctcatcgaggatatcatcagcttcctg
gccaagaacaggcagatcctgctctactctgcgaccttccccatcagcgtgcagaagttc
atggccaagcatctccagaaaccctacgagatcaacctgatggaggagctgactctgaag
ggaattactcaatactacgcctacgtcacagagaggcagaaagtccactgcctaaacaca
cttttttccaggcttcagataaaccagtcgattatcttctgtaactccacccaaagggtg
gagcttttggccaagaagatcactcagctgggctactcctgcttctacatccacgccaag
atgatgcaggaatacagaaaccgtgtgtttcacgacttcagaaatggactgtgcagaaac
ctggtctgcactgatctcttcaccaggggcatcgatatccaggctgtcaacgtagtcata
aactttgacttccccaagaatgccgagacttacctccatcgtattggaagatcagggagg
tttggtcacctgggcttggccatcaacctgatcacatcagaggaccgcttcaacctgaaa
gccatcgaggaccagctggtgaccgacatcaagcccattcccagcagcatcgacaagagc
ctctacgtggccgagttccacacgtccggcgccgactgcgacgtggaggagatcgaggag
aagccaacagggcgccaacaggacagcacctaa
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