Gasterosteus aculeatus (three-spined stickleback): 120826464
Help
Entry
120826464 CDS
T07457
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
gat00535
]
120826464
Proteoglycans [BR:
gat00535
]
Extracellular matrix (ECM) proteoglycans
Others
120826464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
DUF4959
Motif
Other DBs
NCBI-GeneID:
120826464
NCBI-ProteinID:
XP_040044702
LinkDB
All DBs
Position
X:17182462..17229416
Genome browser
AA seq
1865 aa
AA seq
DB search
MRSSLFLGLLGLFVVSLFPQPAQGQVSSPRRFRAKILSPTRLHVSWKEPKGQFESYKVVY
STRPGGEQKEVEVSKQDAKLLIDDFDPSKEYNFKVVALSGGQQSKPLQATHEAQQSGVEV
VRSPRRQDAREDNDISEVEDEFMCRTPAVSDIVILVDGSWSIGRINFRLVRTFLENLVRA
FTVEFDKTRIGLAQYSGDPRIEWHLNTHSTKAAVMEAVKNLPYKGGNTLTGLALTFILET
SFKPESGSRPGVPKIGILITDGKSQDDVIPPARSLREAGIELFAIGVKNADENELKAIAS
PPEETHVYNVADFSVMSDIVESLTQTVCERVEHLDKQIKVEGNPAPPPVAMAPPRDLVTS
DITARSFRVTWTHAPGQVEKYRVVYYPASGGRPEEKVVQGAENTVELSYLNSLTEYQLAV
FAVYRSSASEALRGSATTLALPMVNDLELLDISHSTMTVRWMAAAGASGYMILYAPLTGG
EPADEKEVKVEDTVNVVELEGLTPATEYTVTVYALYGEEASDPMTSQQTTLPLTPATNLR
FSDVDHSSSRLTWDSASGKANGYRIMYVKTDGVQTNEVDVGRVTAWLLRNLTSLTEYTVG
VFAVYNEGQAEAATNSFTTKTVPEPQDLRSSDISTDRFRVSWQHPASDVVMYRLSWTASD
GGDSKEVLVNGDINSYLILGLSPTTKYEVLLAAVYANEAESDDVVLVESTVERTTTVATT
TTTSATPRYGFRSMRVDEETTFSMRVAWQPMDPRNVRHYRLSYVSANGDRAEEQRMAPAG
QNSLVLQPLLSDTEYQISITPVYPDGDGPAAVRTGRTLPLSAPTNLRVSEEWYNRFRISW
DVPPSPTMGYRVVYQPQSVPERALKTFVGEDVNTMLFVTLLSGTEYSVKFIASYTTGSSE
PLSGGPKTLYLGVSGLNASQVKVSSICAQWQPHRHASSYRLLLESVPDGHKQETRLSGGA
NRHCFNSLRADTQYKLSLRAQLQDGTEGPEVSVAAATLPVPTPKPTAPPTTTPLPTIPAA
KEVCKAARADLVFLVDGSWSIGDDNFLKIIRFLYSTAGALDRIGPDGTQVAIAQFSDDAR
TEFKLNSHSDKERLLDAINRISYKGGNTKTGRAIQHVKENIFTVEGGVRRGIPNVLVVLT
DGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDAFTKIE
EKLVTFVCEAASATCPSVPMSGSSTPGFRMMELFGLAESRYGSVAGVSMVPGTFNTFPCF
HLHADAFLAQPTRYIHPEGLPSDYTISLLFRLLPDTPEEPFALWEVLDQKNEPLVGVILD
HGGKTLTFFNNDFKGDFQTVTFEGPDIKKLFYGSFHKLHIAVSKTSAKVLIDCSAVDEKS
INAAGNISTDGVEVLGRKVRSRGNKDSSAPFQLQAFDIVCSTSWAGRDKCCELPGLRKEA
DCPAMPKACTCTQDSKGPPGPAGPPGGSGIRGARGDRGEPGPVGATGAVGDAGLPGPPGP
QGPQGHSGRSIIGPPGGPGERGQKGEAGQQGVQGLAGRPGAPGREGPPGPRGLPGKDGPP
GRPGPSGTIGTPGAPGAPGNTGSSGKPGDLGPPGLPGSKGERGERGDLQSTSSVQDIARQ
VCEQLIQSHMARYNSILNHVPSPPVSIRTVPGPPGEPGRQGTPGPQGEQGPSGRPGFPGQ
NGQNGQPGERGQSGEKGDKGSPGVGVQGPRGPPGPPGAQGQGRPGSQGPSGRPGNPGSPG
RPGNPGPVGSAGSPGYCDQNSCVGYNVGEGDDVTDRGAVPAVQLPPSVFQNYGEVEEEDP
YRFYEPNYPAPQPVAPDDPEYQQDGIDLSSPGVARVARSTGEGGEKGVSLERRLKGGAKT
PPGLI
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcctcactgttcctcggcctgctgggcctctttgtcgtctccctgttccctcag
ccggcgcagggccaagtttcatcaccgcggagatttcgtgccaaaatcctgagtcccacc
cggctgcacgtgtcctggaaggagccgaagggacagtttgaaagctacaaggtcgtttac
tccacgcgaccaggtggggagcaaaaggaggttgaggtatcgaagcaggacgctaagctc
ctcatcgacgactttgacccctccaaagagtacaactttaaggtggtcgcgctcagcgga
ggacagcagagcaaacccctgcaggccacacatgaagcccagcagtccggcgtcgaggtg
gttcggtctccgcggagacaggacgcccgggaggacaacgacatctcagaagtggaggac
gagttcatgtgcaggactccggccgtatcggacatcgtcatcctggtggacgggtcctgg
agcatcgggcgcatcaacttccggctcgtcaggaccttcctggagaacctggtcagggcc
ttcacggtggagttcgacaagaccaggatcggtctggctcagtacagcggagacccgcgg
atcgagtggcacctcaacactcacagcaccaaagcggccgtgatggaggcggtgaagaac
ctgccgtacaaaggagggaacacgctgacaggtctggctctcaccttcatcctggagacc
agctttaaacccgagtccgggtccaggcccggcgttcccaagatcgggattctcatcacg
gacgggaagtcccaggatgacgtcatccctcccgcgcgcagcctcagggaggccggcatc
gaactgttcgccatcggtgtgaaaaacgccgatgaaaacgagctgaaggccatcgcgtct
ccccccgaggaaactcacgtgtacaatgtggccgacttcagcgtgatgagcgacatcgtg
gagagtctcacgcagacggtgtgtgagcgggtggagcatctggacaagcagatcaaagtg
gagggaaacccggcccccccgcccgtcgccatggctccgccccgcgacctggtgacctct
gacattacggctcgcagcttccgggtgacgtggacacacgcaccgggccaggtggagaag
taccgggtggtgtactacccggccagcggggggcggccggaggaaaaggtggtgcagggg
gcggagaacaccgtggagctcagctacctcaactcgctgacggagtaccagttggccgtc
ttcgccgtgtaccggagctcggccagcgaggcgctgagaggcagcgccaccaccctggcg
ctgccgatggtcaacgacctggagttgttggatatctctcacagcaccatgacggtgcgc
tggatggcggccgccggggcttctgggtacatgatcctctacgctccgctgacggggggg
gaacccgcggacgagaaggaggtgaaggtggaggacacggtgaacgtggtggagctggaa
ggactgacgccggccacggagtacacggtgacggtttacgccctgtacggagaggaggcc
agcgaccccatgaccagccagcagaccacactgccgctgactcctgcgaccaacctgcgt
ttctcagacgtggaccacagctccagccgcctcacgtgggactcggcctccgggaaggcc
aacggctaccgcatcatgtacgtcaagaccgacggagtccagaccaacgaggtggatgtt
ggccgtgtgaccgcctggctgctgagaaacctgacctcgctgacggagtacacagtcggg
gtctttgccgtctacaacgagggacaagccgaggccgcgaccaacagcttcaccacgaag
accgtccccgagccgcaggatctgaggagcagtgacatctccaccgacagattcagggtg
tcatggcaacacccggcctccgacgtggtgatgtaccgactctcctggacggcctcggac
ggaggagacagcaaagaggttctggtgaacggagacatcaacagctacctgatcttggga
ctttcccccaccaccaagtacgaagtcctcctcgccgccgtctacgccaacgaggcggag
agcgacgacgtggtcctggtcgagtccaccgtcgagagaacgaccacagtcgccacgacg
accaccacctcagcaactcctcgctacgggttcaggagcatgagggtggatgaggagacc
accttcagcatgcgggtggcctggcagcccatggaccccaggaacgtccggcactaccgg
ctgagctacgtcagcgccaacggagaccgggcggaggagcagaggatggcccccgcgggt
cagaacagcctggtcctgcagcccctgctgtcggatacagagtaccagatttccatcacg
cccgtttaccccgacggagacggaccagcggcggtgcggactggacgaacgcttcctctc
tcggctcctacgaacctgcgcgtatcggaggaatggtacaaccgcttcaggatcagctgg
gacgtcccgccatcccccaccatgggctacagggtggtctaccagccccagtctgttcca
gaacgagctctgaagacctttgtgggggaggacgtgaacaccatgctgttcgtgaccttg
ttgagcgggacggagtacagtgtgaagttcatcgcctcctacaccaccggctccagtgag
cccctgtcaggggggcccaagaccctgtacctgggggtcagcggcctgaatgcctcccag
gtaaaggtgagcagcatctgcgcccagtggcagccgcaccgccacgccagcagctaccgc
ttgctgctggagtccgtgcccgatggtcacaagcaggagaccaggctgagtgggggggcc
aaccggcactgcttcaacagcctgagggccgacacgcagtacaagctgagcctgagggcc
cagctgcaggacggcaccgaggggcccgaggtcagcgtcgccgcggcaacactccccgtc
ccgaccccgaagcccaccgcaccccccaccaccacgccgttacccacaatccccgctgct
aaggaagtctgcaaggcggccagagccgacctggtcttcctggtggacggatcctggagc
atcggcgacgacaacttcctgaagatcatccgcttcctgtacagcaccgcgggggctctg
gaccggatcgggccggacggcacgcaggtggccatcgcccagttcagcgacgacgcccgc
actgagttcaagctgaactcgcacagcgacaaggagcgcctgctggacgccatcaacagg
atctcctacaagggggggaacaccaagacgggtcgagccatccagcacgtgaaggagaac
atcttcacggtggaggggggggtcaggagggggatccccaacgtgctggtggtcctcacc
gacgggcgctcccaggacgacgtcaacaaggtgtccaaggagatgcagatggaaggctac
atcgtgttcgccatcggcttcgccgacgccgactacggcgagctggtgagcatcgccagc
aagcccagcgaccggcacgtcttcttcgtggacgacctggacgccttcacgaagatcgag
gagaagctggtgacgtttgtgtgcgaggccgccagcgccacgtgtccgtccgtaccgatg
agcggcagcagcaccccaggtttccgcatgatggagctgttcgggctggcggagagtcgg
tacggcagcgtcgccggcgtttccatggtacccggcaccttcaacaccttcccgtgcttc
cacctgcacgccgacgccttcctggcacagcccaccaggtacatccaccctgaagggctg
ccctccgactacaccatcagcctgctgttcaggctgctgcccgacacgcccgaggagccc
ttcgccctgtgggaggtgctggaccagaagaacgagccgctggtgggcgtcatcctggac
cacggcgggaagacgctgacgttcttcaacaacgacttcaaaggagacttccagacggtg
accttcgaagggcccgacatcaagaagctcttctacggcagcttccacaagcttcacatc
gccgtcagcaagacgagcgccaaggtgttgatcgactgcagcgccgtggacgagaaaagc
atcaacgcggcgggaaacatcagcaccgacggcgtggaggtcctcgggaggaaggtccgg
tcccgagggaacaaggacagctcggccccgttccagcttcaggcctttgacatcgtgtgc
agcacgtcgtgggccggcagagacaagtgctgcgagctccctggtctgaggaaggaggcg
gactgcccggccatgcccaaagcctgcacctgcacccaggacagcaaaggcccccctggg
ccggccggacccccgggaggttcaggcatcagaggagcccgaggagatcgtggagagcca
ggtccggtgggggcgaccggtgccgtgggggacgcgggactgccaggacctccggggccc
caagggccgcagggccacagcgggcgctccatcatcggacccccgggaggtccaggagag
cgaggacagaaaggtgaagcgggacaacaaggcgtgcagggactagctggcagacctgga
gctccaggcagagaaggacccccgggacccaggggcctgccgggtaaagacggaccgccg
ggccgaccgggtccctcaggaaccatcgggacgccaggagccccgggggccccaggtaac
acgggctcttcagggaaaccaggagatctgggacctccgggtcttcctggaagcaaaggc
gagagaggtgaacggggggacctccagtcgacctcgtccgtccaggacatcgccaggcag
gtctgtgagcagctgatccagagccacatggcgcgctacaactccatcctcaaccacgtg
cccagtccaccagtttccatccgcactgtgccaggcccccccggggagcccggcaggcag
gggaccccggggccccagggagaacagggaccctctggaagacccggcttcccaggacag
aacggacagaacgggcagcctggagagagaggtcaatcaggagaaaagggcgacaaagga
tctccaggagttggagtccaaggcccccgaggccctccaggaccccccggtgcgcagggg
caaggcagacctggcagccagggtccgtcggggcgacccgggaaccccggctctcctggc
cggcccggtaaccccggacccgttggctctgccgggtctccggggtactgcgaccagaac
tcgtgtgtgggctacaacgtgggagagggcgatgatgtcactgaccgcggcgctgttccc
gcagtccaactgccacccagcgtcttccagaactacggcgaggtcgaggaggaggacccc
taccgcttctacgagcccaactacccggccccgcagcccgtggcccccgacgatccggag
taccagcaggacggcatcgacctgagctcccccggcgtggcccgcgttgcccgcagcacg
ggggagggtggtgagaaaggagtcagcctggagaggaggctaaagggaggcgcgaagacg
ccgcccggactaatttaa
DBGET
integrated database retrieval system
