Gasterosteus aculeatus (three-spined stickleback): 120827155
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Entry
120827155 CDS
T07457
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
gat01001
]
120827155 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
gat04054
]
120827155 (ciita)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
120827155 (ciita)
Protein kinases [BR:
gat01001
]
Serine/threonine kinases: Other
TAF1 family
120827155 (ciita)
Pattern recognition receptors [BR:
gat04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120827155 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_8
AAA_16
LRR_14
NPHP3_N
nSTAND3
nSTAND_NTPase5
AAA_22
LRR_NXF1-5
NB-ARC
TsaE
AAA
Motif
Other DBs
NCBI-GeneID:
120827155
NCBI-ProteinID:
XP_040045754
UniProt:
A0AAQ4QMF2
LinkDB
All DBs
Position
XI:complement(15733102..15743774)
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AA seq
1375 aa
AA seq
DB search
MLLPLVPSVTPAWQAGGARCPDRNVEEETELATACRTLRSHADSFLRCAEVDMRGLPLSA
DVGGQPAFLDQDRAAPPGDVDGWWEADRTAGAAEDLLSLMREVQCGAGFPEDVAHLLSHA
DVGDPPLSSGAGHGVPSGLAELFFTTTRSTEDSQEDGEVEASVETQWGVRMQDVDQDPFI
CPDLGEIPDDLSEYLNDDYLGKFVVPYLDTDVLFNDPSLECEEELSTCSALPMHTEPAGP
DVPQQQQQTDKTSNRTGSRRKRARAPRLQRCTDENSPSRPKRHRAAGRPETVVAQVEPPV
TRGSHPCSAETAGLFAPPPRILHLHPSIQFIPIPDAAAYQMMRALRVSHPVISLPLPNTA
AAPTYILVPAASPPFKQEVPPLSPMDGAVAPVQMSSPPAGSLSDAASRAGSPTRASRPSP
SSPGGDTEESAVPPSPAALDVPQVVKDYIVEAKAHVSQTCQDMESGLSLTSQYVDVQVSR
KEILHSGKNTNKVLEKDLVIAGDTDRRESLLGHLQMFKGSKGDKPKRFVLLLGNAGMGKT
TLVRKLCLDWSRNCLPEFDFVFFLDGKALSLPEASHSLQTLLLNFSSLAPPCTDPEAVYA
QILAAPKRVLVIFDGFDEVRDYEILLQTQEKDLITSLHKDSKAPAFTVRQLYSAVLQRLL
LPGCTLLLTTRPRGSASQLLRRTDSLLEVCGFNPANVETCLSRYFTDPDLRATALGLLKS
SSYLQLLCWNPGLCRLVCLALEHCKGLGHLPRTLTGLCHQVLCLKLEEERRSALSEVGPQ
SLSGRSVEKPQTQISSSPAVRRRRSTRPTAPVHTRSRTQSEKGEDGVDGEEMRSVGGEVD
RTEREWLSQLSSLAWKGVKANSAILSPETALSAQLKAFGQRTGLFFSYPRGTRPGVSSDE
RGEDGEEMGTRKNGKKRGKKGRTYDEDAGASEEHFLLWANPFLQSYLAAVHLSLSRTVTD
RAFVQTLPFHPGQKERRRPQREELDLTQRFAVGLLFHDRAELQRLRSSTEKSVGDVVAAK
RALVTGHLQGLSHGDLSPARVLEACHHVFEAGCTHGGERLVAHLAANLPEVLTFHGVPLS
PSDVFAVRNVLESGGTEGRRFSLDLEDSGIQIPGLRALVGLNNISTYRACIADVISLWEQ
LEQSGEDVLLRETVSKFKTHPLKATRACHVEHLAKLVQLHARRRLSLSSSQSDSVLSEGV
PAVKELHKLEFELGPGKCAPVLSQLWKLLPGLHNLQHLDMENSKIGDGGAEKLADALVHL
GSLEILDLSQNCISDEGVKKLAITLKDLPKLHCLSLNSNEISDEGAESLAAVLPQAPSLT
DLDLEYNKLTDVGAQSLAASLRNCKKMKTLRMWNQCIPYGVFERLQQQDNRIHWQ
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgcctctggttcccagtgtgactcctgcctggcaggctggcggagcgcgatgc
cccgatcgcaacgtggaagaggaaacggagctggcgacggcctgcaggacgctgcgttcg
cacgctgactcctttcttcgatgcgcggaggtggacatgagaggcctccctctctccgca
gacgtcggcgggcagccggcctttttggaccaggatcgcgcggcgccgccgggggatgtg
gacggctggtgggaggcggaccggacggccggcgcggcggaggacctgctctccctgatg
agagaggtgcaatgcggtgcggggttccccgaagacgttgctcatttactttctcacgcc
gacgtcggcgatccccctttgtcctcgggcgcgggtcacggcgtgccgtcgggccttgca
gaacttttttttaccacaactcgcagcaccgaggactcgcaggaggatggcgaggtggag
gcgagcgtggagacgcaatggggtgtaaggatgcaggatgtggatcaggacccgttcatc
tgccccgacctgggagaaataccagatgatttatctgaatacctgaacgacgattacctt
gggaagtttgtggttccttacctggacacggatgtgctcttcaatgacccatcgctggag
tgtgaggaggaactcagcacctgcagtgctcttcccatgcacacagagccggccggccca
gacgtcccgcagcagcagcagcagacggataaaacaagcaaccgcacaggcagcaggaga
aaaagagcccgagcaccccggttgcaacgatgcaccgatgagaactcaccgtcacggccc
aaaagacacagagcagcaggtcgaccagaaaccgtcgtggcgcaggttgagccaccagtc
acccgagggtcacatccgtgttctgcagagacggcgggcctcttcgcccccccgccgagg
atcctgcacctccatccctccatccagttcatccccatcccagacgctgcagcttaccag
atgatgcgggccctgagagtctctcatccggttatcagccttccactccccaacacagct
gctgcacccacttacatattggttcctgctgcctcaccacccttcaaacaggaagtgccc
cccctctccccaatggacggagcggtagcgccagtccaaatgagttcgccccccgccgga
tccctgtcggacgcggcgagcagggccggctctccgacgcgtgcctcccgcccctccccc
tcctcccccggcggcgacacggaggaatcggccgttccgccgtctcctgctgccctcgat
gttccgcaggtcgtgaaggactacatcgtggaagccaaagcgcacgttagtcaaacctgc
caggatatggagtccggcctcagtctgacctctcagtacgtagacgtgcaggtgagccgg
aaagagattctccactcagggaagaacaccaacaaagtcctggagaaggacctggttatt
gcgggagacacagatcgacgagaaagccttttggggcaccttcagatgtttaaaggctca
aagggcgacaaacccaagcgcttcgtgttgctactcggcaacgccggcatgggaaaaacc
accctggtcaggaagctgtgcctcgactggtccaggaactgcttgccagagtttgacttt
gtcttctttttagacggcaaggcgctctctttaccggaagcgtcccacagccttcagacc
ctcctattgaacttctcctcgttggcccctccttgcacggaccccgaggcggtgtacgct
caaatcctcgcggcccctaagcgcgtgctcgtcatattcgacgggttcgacgaggtgcgg
gactatgaaatcctcctccagacgcaggagaaagacttgataacgtcgttgcacaaagac
agcaaagcgccggccttcacggtgagacagttgtactcggccgtccttcagaggctcctc
ctcccgggctgcaccctgctgctgaccacgcggccgcggggcagcgccagccagctgctg
aggcggaccgacagtcttttggaggtgtgcggcttcaaccccgccaacgtagaaacgtgt
ttatcccggtacttcactgacccggacctcagagcgaccgctttgggcttgttaaaaagc
agcagctatctgcagctcctctgttggaaccctggactgtgtcggttggtctgcttggcg
ttagaacactgcaaaggtttaggccacttgccgagaactctaaccgggctctgtcatcaa
gtgctctgcctgaaactggaggaggagagaaggagcgcgctctcggaggtcggacctcaa
tcgctatctgggcgatccgtagaaaaaccgcaaacacaaatctcaagttctccggccgtc
aggcgccgaagaagcacgcggcccacagcgccggttcacacccgctctcgcacccaaagc
gagaaaggggaagacggagtcgacggggaggaaatgaggagcgttggcggcgaagtggac
agaactgagagagagtggctttcccagctgagctctctggcctggaagggcgtcaaagca
aactctgccattctgtcccccgaaacagccctatctgcccaactcaaggcgttcggccaa
aggacggggctcttcttctcctacccccgcgggacgaggccgggtgtctcgagtgacgag
cgaggagaggacggagaagaaatgggaacacgaaagaatggaaaaaagaggggaaagaag
gggaggacgtatgatgaagacgctggtgcaagcgaggagcacttcctgttgtgggccaac
cctttcctgcagagctacctggcagcggttcatctgtctctgtcaaggaccgtgacggac
cgagccttcgtccagacgctccctttccatccaggccagaaggagcgtcggcggcctcag
agggaggagctcgatctcacccagcggttcgcagtcgggctcctgttccacgaccgggcc
gagctgcagaggctccgctcgtccacggagaaatccgtcggagacgtggtggccgccaag
cgggctttggtgacagggcacctccagggtctttcccacggggacctgagccccgcccga
gtcctggaggcttgccaccatgtttttgaggcgggttgcacgcacggcggcgagcggtta
gtcgctcacctggccgccaacctcccagaagtcctgaccttccacggagtcccgctctcg
ccgtcggacgtgtttgccgtgaggaacgttctcgaaagtggcggaacggagggaaggagg
ttcagtttggacttggaggattctgggatacagattccgggcctcagagctctagtcggg
ctgaacaacatcagcacgtatagggcgtgcatcgctgatgtcatctccttatgggagcag
ctggagcagagtggcgaagacgtcctcttgcgagagactgtgtccaaattcaagacccac
cctctgaaagccacgcgcgcgtgtcacgtggagcacctggccaagctggtgcaattacac
gcccgcaggaggctgtcgctcagttccagccaatcggattccgtcctgtcagagggagtg
ccagctgtcaaagagcttcacaagctggagtttgagctcgggccggggaaatgtgccccg
gttctttcgcagctttggaagctcctgcccggtctgcacaatctacaacacttagatatg
gagaacagtaagatcggggacggaggagcagagaaactggccgatgctttggttcacctc
ggttctctggagatactcgatctctcacagaactgtatcagcgacgagggtgttaagaaa
ctagcaatcacgctgaaggatttacccaaactgcactgcttaagcctcaacagtaatgag
atttctgacgagggggccgagagcttagcagccgtcctcccacaggcgccgtcgctcacc
gacctggacttggagtacaacaagctgacggacgtcggggcgcagagcttggcagccagt
ctgagaaactgtaaaaaaatgaagactctgaggatgtggaaccagtgtattccgtatgga
gtttttgagagacttcagcagcaggacaaccggatccattggcagtag
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integrated database retrieval system
