Gasterosteus aculeatus (three-spined stickleback): 120827171
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Entry
120827171 CDS
T07457
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120827171 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120827171 (xab2)
03041 Spliceosome [BR:
gat03041
]
120827171 (xab2)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120827171 (xab2)
Spliceosome [BR:
gat03041
]
Complex B
Other components
Prp19-related factors
120827171 (xab2)
Complex C
120827171 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21_C
ARM_TT21
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
120827171
NCBI-ProteinID:
XP_040045781
UniProt:
G3P6H9
LinkDB
All DBs
Position
XI:complement(8490934..8497822)
Genome browser
AA seq
846 aa
AA seq
DB search
MASLNGKPDVMFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGAKATLNLIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLKVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGKDEDEDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDAMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVFKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDTAERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCQRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVHFMSSQMMKATTGTVSDLAAGGMGIDDMKMLEQKAQLLAAEAEQDKP
KPKEKILFVRSDTSRSELAELSKQANPDEIDIDDEDDEDEENQGPEEVQLEQKSVPTAVF
GGLKED
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcctcactaaatggaaaaccagatgttatgtttgaagacgacgatctgccatatgaa
gaggagattatcaggaacccatactcggtcaagtgctggatgcgttacatcgaattcaaa
cagaacggagccaaagccaccctcaacctgatctacgagcgcgctctgaaggagctacct
ggcagctacaagctgtggtataattacttgagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccgagctacgaagagatcaataactgccatgaaagagcattggtgttc
atgcacaagatgcccagaatatggcttgattactgccagttccttgtatcccaaagcaag
atcacaagaagccggcaaacatttgaccgagccctccgagctcttcccgttactcagcat
ccgcgcatctggcctctgtatctccgctttgtccgtaaccttcccctgcctgagactgca
atccgagtgtaccgcaggtaccttaagctttcccctgaaaatgccgaggaatacattgac
tacttacgatctgttggccgcttggacgaagcagctgtgcgactcgctgctgttgtcaat
gatgaaagctttgtgtccaaagagggcaaatctaactatcaactatggcatgagctgtgc
gacctgatctcccagaaccctgataaagtgacgtctctcaaagtaggggccattatccga
ggaggcctcactcgtttcactgaccaacttggaaaactctggtgctccttagctgactat
tacattaggagcggtcactttgagaaggcccgggatgtgtatgaggaggccatcctcact
gtggtaacagttcgggatttcacacaagtatttgatagttacgcccagtttgaagaaagc
atgatcgcggcaaagatggagaccacagctgagatggggaaggatgaagatgaggacata
gacatggagcttagactggcccgcttcgagcagctaatagctcgacggcccctcctgttg
aacagtgttctgttgaggcagaaccctcataatgttcatgaatggcacaagagggtgaaa
ttgtacgagggaaatccacggcagatcattaacacatacactgaggcagtgcaaactgta
gatgcaatgaaggccacggggaagccgcactctctctgggtttccttcgctaaattctat
gaggaaaatgagcagctggatgacgctaggaccatttttgagaaggctaccaaggtgaac
tacaagcaggtggatgacctcgctgcagtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggccctgcgcatactcaggaaagctactgcgatcccatccaag
aaagcggagtactttgatgcatccgagccagtccaaaaccgggttttcaagtctttgaag
gtctggtccatgctggcagacttggaggagagtcttggcactttccagtccaccaaagca
gtttacgatcgcataattgacctccgcatcgccacgccacagatcatcatcaattacgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaggcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagcaagagatctgtttgaacaagctctggat
ggctgcccagctaagtttgccaagaccatttacctgttgtatgctaaattggaggaggga
tatggattggcgcgacacgccatggctgtctatgaacgagcaacgcaagccgtagatact
gcggagagacatcacatgttcaatatctacatcaagagagcagctgaaatctatggagtc
acgtataccagagccatttaccagaaagctatcgaggtacttcctgatgagcacgcacga
gatatgtgtcagcgatttgctgacatggagagtaagcttggtgagatcgaccgggccaga
gcaatctactcctactgctcgcagatttgcgacccacgggtgactgcaaatttctggcag
acctggaaagaatttgagatccgccatggaaacgaggacacgattagagaaatgctgagg
atcaaacgaagtgtccaagccacatacaacacgcaggtccacttcatgtcctctcagatg
atgaaggcgacaacaggcactgtgtccgatcttgctgcaggtgggatgggaattgatgac
atgaagatgctggagcagaaggcacagctgcttgccgcggaggcggagcaagacaaaccc
aagcccaaagagaagattctctttgtcaggagtgacacctctcgcagcgagttggctgag
ctttctaaacaagccaatcctgatgagattgacattgatgatgaagacgatgaagatgag
gagaaccagggaccagaagaggtgcagcttgaacagaagagcgtccctacagccgtcttt
ggggggcttaaagaagactaa
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