Gasterosteus aculeatus (three-spined stickleback): 120827414
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Entry
120827414 CDS
T07457
Symbol
top3a
Name
(RefSeq) LOW QUALITY PROTEIN: DNA topoisomerase 3-alpha
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03440
Homologous recombination
gat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120827414 (top3a)
03460 Fanconi anemia pathway
120827414 (top3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gat03032
]
120827414 (top3a)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120827414 (top3a)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
120827414 (top3a)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Topoisomerases
120827414 (top3a)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
120827414 (top3a)
FA (Fanconi anemia) pathway
120827414 (top3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_GRF
Toprim
Zn_ribbon_Top1
Zn_ribbon_GRF_2
zf-C2H2_10
Motif
Other DBs
NCBI-GeneID:
120827414
NCBI-ProteinID:
XP_040046207
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All DBs
Position
XI:complement(5496402..5506546)
Genome browser
AA seq
1018 aa
AA seq
DB search
MLVHLFGRSLLRPGLRRLAVLRRCLCAAQSDPCPGTPQRGDMIRNRAQIKRVLCVAEKND
AAKCISEIMSGGTSRRREGMSKFNKIYEFEYHLFGQNVTVTMTSVSGHLLGQEFKAQFQK
WHSCNPVLLFDAEVEKHCPDNMKQIKRTLEKEVRQCQALVIWTDCDREGENIGFEIIDVC
KAVKPNVQVFRAKFSEITPNSIRRACETLTEPNANVSDAVDVRQELDLRIGASFTRFQTL
RLQKIFPASLANQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVLHEVEEDTVEFS
WKRNRLFNHTACLVLYQMCMEDPIATVTSVTSKPKSKWRPLPLDTVELEKLASRKLKISA
KETMKIAEKLYTQGYISYPRTETNIFPTTLALGPLVEQQTQSPVWGTFAQRVIDQPGGPN
PRQGKKSDQAHPPIHPTKHSSTLQGNEGRLYEFIVRHFLACVSQDALGQETVVDIDIAQE
NFSTSGLMIIARNYLDVYPYDRWSAKVIPVYEQGSQFQPSAIEMADGQTSPPQLLTEADL
ISLMEKHGIGTDATHAEHIETIKSRMYVGLTADQRFLPGELGMGLVEGYNSMGYEMSKPN
LRAELEADLKLVSEGRKDKQSVLQNHIQKYKTVFIESVRKAKKLDEALSQYLGAAQEIAE
AEQQDMEMPLPVRKCPNCRQDMVLKKKREGNGKYLSCSGYPACKTAVWFPDTVLEVSRDD
SICPTCQPHPVHMLKLKFRRGSLPPMMPLEFVGCIGGCDETLREVLDLKYLRPGGGGGGG
GGRGGGGGGGRGDNPRPPAPRPPRPPSSNPRPSLPPVPSWTPQPRPPGGGGGAGVGTSSD
AIVCNCGQDALLLTVRKDGPNQGRQFYKCNGGSCNFFLWADQPTQQGDPQGRAPPRFAVV
SSNTPGGGRGRDGGAGGQAGQTMCNCNEATVTLTVQKDGPNKGRTFHTCGKPRDQQCGFF
LWADENEPPAVFGGGAAAKKGRKIAGEAAPNKPPAAKKPRSCGICHMPGHTRVTCPQR
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgctagtgcaccttttcggaagatctttgcttcgaccgggattacggcgactcgcggtc
ctacggaggtgcttgtgtgcggcgcagagtgacccgtgtccggggacgccgcagcgggga
gacatgatccggaaccgggctcagatcaaacgggtcctctgcgtggccgagaagaacgat
gcggccaaatgcatctcagagatcatgtccggcgggacgtcccgcaggagagaggggatg
tcaaagtttaataaaatctatgagtttgaatatcatctctttggtcagaatgtgaccgta
acaatgacttcagtatctggacatctactgggtcaggagtttaaagcacagttccagaaa
tggcacagttgcaatcctgtgctattatttgatgctgaagtggagaagcactgtccagat
aacatgaaacaaatcaagcggacactggagaaagaggtgcgtcagtgccaggccttggtc
atctggaccgattgtgacagagagggagaaaacattggctttgaaatcatagatgtctgc
aaagcagtgaagcccaatgtacaagtgtttcgggcaaagttttctgagatcactcccaac
tccatccgtagagcttgtgagaccctgacggagccaaacgctaacgtcagcgacgcagtc
gacgtccgtcaggagctggacctgcgaataggtgcgtccttcactcggttccagacgctt
cgcctgcagaagatcttcccggcgtctctggcgaatcagctgatctcttacggcagctgt
cagtttcccactctgggctttgtggtggagcgttttaaagccatccaggctttcatacct
gagactttctacaagatcaaagtgctgcacgaggtggaggaggacactgtggagttcagt
tggaaaagaaaccgtctcttcaaccacacagcttgcctggtgctctaccagatgtgcatg
gaggatcccatagcaacagtcacctcagtaaccagcaaacccaagagcaagtggagaccg
ctgcctttggacactgtggaattagagaaacttgcatctcggaaactaaaaataagcgcc
aaagagaccatgaaaattgcagagaaactctatacccaggggtacatcagctacccacgc
acggagaccaacattttccccacaacgttggctctcggtccgctggtggagcagcagaca
caaagcccggtctgggggacgttcgcccagagggtgattgaccagcccgggggtcccaac
ccacgacagggcaagaaatctgaccaggcccacccccccatccaccccaccaagcactcc
agtaccctgcagggaaatgaaggacgtctgtacgagttcattgttcggcacttcctggcc
tgcgtgtcccaggatgctttagggcaggagactgtggtggacattgacatcgctcaggag
aacttctccacctcgggactcatgatcattgcgaggaactacttggacgtttacccgtat
gacaggtggagcgctaaggtgattccagtgtacgagcagggctctcagttccagccctct
gctatcgagatggcggacggacagacgagtccaccgcagctgctcactgaggccgacctc
atatccctgatggagaagcacggcatcggcacggatgcgacccatgcagagcacatcgag
accatcaagagtcgcatgtatgtgggcttaacagctgatcagaggtttctgcctggagag
ctcggcatgggactggtggagggctataactccatgggatatgagatgtccaaaccaaac
ctgcgagctgaactggaggctgacctcaagttggtgtcagagggcaggaaggacaaacag
agcgtgctgcagaaccacatccaaaaatacaagaccgtcttcatcgagtccgtcaggaag
gccaaaaagttagatgaagccctgtcacaatatctgggggccgctcaggaaatcgctgaa
gccgagcagcaggacatggagatgccgctgcccgtcaggaaatgccccaactgcaggcag
gacatggtgctgaagaagaagagggagggaaacggtaagtacctgtcctgctcgggttac
ccagcttgtaagacggcggtgtggttccccgacacggtgctggaggtgagcagggacgac
agcatctgtcccacctgtcaaccgcaccctgttcacatgttaaagttgaagttccgcagg
ggcagccttcctcccatgatgcctctagaattcgttggctgcatcggcggctgtgacgag
acgctcagagaggtgctggacctgaagtaccttcggccagggggaggtggtgggggaggg
ggaggaagaggaggaggagggggaggaggaagaggagacaatccccgtccaccagctcca
aggcccccaagacccccaagttcaaatcctcgaccttccctccccccggtcccctcctgg
accccgcagccacgacctccaggtggtgggggcggtgcaggtgtgggcaccagcagcgat
gccatagtgtgtaactgtgggcaggatgcactcctcctgaccgtgcgcaaagacggcccc
aaccaaggtcggcagttctacaaatgcaacggcgggagctgcaacttcttcctgtgggcg
gatcagccgactcagcagggggatccgcagggccgagcacccccgaggttcgccgtggtg
tccagcaacacccccggtggaggcagagggcgggacgggggtgcgggaggacaggcggga
cagacaatgtgtaactgcaatgaggcaacggtgacactcacggtgcagaaggacggccca
aacaagggccggacgttccacacttgcgggaaaccgagagaccagcagtgtggcttcttc
ctgtgggccgatgagaacgaacctccagcagtgtttggtggtggagctgcggcgaagaaa
ggaaggaagatcgccggagaggccgcccccaacaaacctccagctgccaagaaacctcgt
tcctgcggcatctgccacatgccgggacacacccgagtcacctgcccgcagcggtga
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