Gasterosteus aculeatus (three-spined stickleback): 120827416
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Entry
120827416 CDS
T07457
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat00260
Glycine, serine and threonine metabolism
gat00630
Glyoxylate and dicarboxylate metabolism
gat00670
One carbon pool by folate
gat01100
Metabolic pathways
gat01200
Carbon metabolism
gat01230
Biosynthesis of amino acids
gat01240
Biosynthesis of cofactors
gat04981
Folate transport and metabolism
Module
gat_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
120827416 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
120827416 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
120827416 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
120827416 (shmt1)
Enzymes [BR:
gat01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
120827416 (shmt1)
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Gene cluster
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Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
120827416
NCBI-ProteinID:
XP_040046209
UniProt:
A0AAQ4RZI1
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Position
XI:5516970..5525626
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AA seq
557 aa
AA seq
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MSQLCLSSVGQCPGSTPCTAFDRHAPLSSLFIFFFFKLCRCFLNLSMIYIESKQIIMLLL
KIPTCFDQRNKETMSLKNEHNFVVSKETWDSHNKMMLEPLSVSDSEVFSIIKKEKHRQTY
GLELIASENFASRAVLEALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQKRALETYGL
DSEKWGVNVQPYSGSPANFAVYTAVVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIF
FESMPYKVNPETGYIDYDRLQENARLFHPRLIIAGTSCYSRNLDYSRLKQIANENGAYLM
GDMAHISGLVAAGVVPSPFDYCDIVTTTTHKTLRGCRSGLIFFRKGVRSVDAKGKEALYN
LESLINQAVFPGLQGGPHNHAIAGVAVALKQAMTSDFKAYQMQVLVNCKSLSNALIDFGY
KIVTGGSDNHLILLDLRSKGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRFGSPA
LTSRGMMEEDFKKVAEFIHKGIELTLEVQRSLDAKATLKEFIQALAQGEKFQQRLSLIKA
EVEGFAGQFPMPGLPEL
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtcacagctgtgtttgtcctccgtaggacagtgtcctggcagcaccccctgcacggcc
tttgatagacatgcacccttatcatctttatttatcttttttttttttaagttgtgtcgt
tgctttttaaatctgtcaatgatttatattgagtctaaacaaataattatgctcctcctt
aagattccaacttgttttgaccagagaaacaaagaaaccatgtctttaaaaaacgagcac
aacttcgtggtgagcaaagaaacgtgggattcgcacaacaagatgatgctggagccgctg
tccgtcagcgactctgaggtgttctccatcataaaaaaggagaagcacaggcagacgtac
ggcctggagctgatagcgtcagaaaactttgccagcagagccgtcctcgaggctctgggt
tcctgcatgaacaacaagtactctgagggatatcccggtcagaggtactacggtggtaca
gagcatgttgatgagctggagagactctgtcagaagagggcattggagacctacggcctg
gactcagagaaatggggtgtcaacgtgcagccatactccggttctcctgctaactttgcc
gtgtacacggccgtggtggagccccatggcaggatcatgggcctggacctccctgatgga
ggtcacctgacacacggcttcatgaccgacaagaagaaaatctcggccacgtccatcttc
tttgaatccatgccgtataaggtgaatccagaaaccggctacatcgactacgacagactg
caagaaaacgctcggctgttccaccccagactcatcattgcagggacgagctgctattcc
cgcaacctcgactacagccgcctgaagcagatcgcaaatgagaatggtgcgtacttgatg
ggagacatggctcacatcagcgggttggtggctgccggagtggtgccctcaccctttgat
tactgtgacattgttaccacgacaacacacaagacactgcgtggctgccgctctggactc
atcttcttcaggaaaggcgtgcgcagtgtagatgccaaggggaaagaggctctgtacaac
ttggagtccttgatcaatcaggctgtgtttccagggctgcaggggggaccccacaatcac
gccattgcaggtgttgctgtagctcttaagcaagccatgacgtcggatttcaaggcctac
cagatgcaggttcttgttaactgcaaatctctatccaatgccctcattgactttggctac
aagattgtcactggcggctctgacaaccatctgatcttgcttgaccttcgcagcaaaggg
actgacggaggacgagctgagaaggttttggaagcctgtgccattgcctgtaataagaac
acctgtccaggggataagagtgccctgcgccctagtggcctgaggtttggctctccagcg
ctgacttccagaggcatgatggaggaggatttcaagaaggttgctgagttcattcataaa
ggtattgagctgaccttggaggtgcagagaagcctggatgccaaagccactctgaaggag
ttcattcaggcactcgctcagggagagaagttccagcagcgtctgtcactgatcaaggca
gaggtggagggtttcgctggccagttccccatgcctggcctgcctgagctctag
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