Gasterosteus aculeatus (three-spined stickleback): 120827537
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Entry
120827537 CDS
T07457
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120827537 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120827537 (ddx5)
03009 Ribosome biogenesis [BR:
gat03009
]
120827537 (ddx5)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120827537 (ddx5)
Spliceosome [BR:
gat03041
]
Complex A
U1 snRNP components
U1 related factors
120827537 (ddx5)
Complex B
120827537 (ddx5)
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
Pre-60S particles
Helicases
120827537 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120827537
NCBI-ProteinID:
XP_040046437
UniProt:
G3NVH8
LinkDB
All DBs
Position
XI:4486046..4492071
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AA seq
624 aa
AA seq
DB search
MPGYSDRDRGRDRDRGYGGSGGPPRFGGNRGGGGGGGGGKFGNPGERLRKKQWNLDELPK
FEKNFYQQHPDVARRSPQDVENYRRAKVITFKGRDCPNPIAKFHEAAFPSYVMDVINKLN
WTEPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL
APTRELAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE
AGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF
LKEYVQINVGALQLSANHNILQIVDVCNDGEKENKLIRLLEEIMSEKENKTIIFVETKRR
CDDLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFV
INFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLISVLREANQAINPKLLQ
MAEDRGGRSRGGRGGDYRDDRRDRYSGRRDFGGFRDRDNGRGFDNGPNKAFGTNTQNGGY
GASSTSSGNGFSGGSYNGNGQSTFNAPAAAFGGQNFQAQQFAPPKGGAQTAAIPPFPFPL
PPAPAPQQHPPPLVPYPMPPQFSQ
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatattccgacagagaccgcggcagggatagagatagaggctatggtggtagt
ggcggaccccctcgctttggagggaaccgtggtggcggtggaggaggtggaggaggaaag
ttcggcaatcccggcgaacggctgcggaagaaacaatggaacctcgacgagctcccgaag
tttgagaaaaacttctaccaacagcatccagatgttgcccgcaggtctccgcaagacgtt
gaaaactatagaagggccaaagtaatcacatttaaggggagagactgtccaaacccaatt
gccaaattccacgaggccgcctttccatcttatgtgatggatgtgatcaacaaattgaac
tggactgaaccgacacccattcaggctcaaggctggcccctggccctgagtggcaaggac
atggtcggcattgcacagactggttcaggcaagactctttcctatttgctgcctgcaatt
gtgcacatcaaccaccagcctttcctggaacgtggagatggtccaatctgcttagtgttg
gcgccaactcgtgagctcgcacagcaggtgcaacaggtggctgcagaatatggcagagct
tctcgcctgaagtctacctgtatttatggcggcgcacccaagggaccacagattcgtgac
ctggaaaggggtgtggagatctgcattgccactccaggaaggctcatcgacttcctcgag
gcaggaaaaacaaacctccgtcgctgcacttacctcgtgctggacgaggcagacagaatg
cttgacatgggctttgagccgcagatccggaaaatcgttgaccaaatcaggcctgaccgc
cagactctgatgtggagtgccacttggcccaaagaggtgcgtcagctggcagaggacttc
ctgaaggagtacgtccagatcaatgttggggccctgcagctcagtgctaaccacaacatt
ctgcaaattgtggatgtctgtaacgacggcgagaaagagaacaaactcatccgtctgctt
gaggaaataatgagtgagaaggagaacaagaccatcatctttgtggagacaaagaggcgc
tgtgatgatctcaccaggaggatgagaagggatgggtggcccgctatgggaatccacggg
gataaaagccaacaggaaagagactgggttctcaacgagttcaaatatggaaaagctccg
atactcattgctacagatgttgcctccagaggtctagatgttgaagatgtgaaatttgtc
atcaactttgactacccgaacaactctgaggactatatccaccgcattggccgaacagct
cgtagccaaaagacaggcacagcttacaccttcttcactccgaacaacatgaggcaggcc
agcgacctcatctctgtgctccgcgaggccaaccaggcgatcaaccccaagctcctccaa
atggcggaagacagaggaggtcgttcaaggggaggcagaggtggtgattatagagatgac
cgtcgggataggtattctggacggcgtgactttggcggttttagggatcgggataatggc
agagggtttgacaacggaccaaataaagcctttggcacaaatacgcagaacggaggctat
ggggccagcagcactagcagtggaaacggcttcagtggaggcagctacaatggtaatgga
cagtccacctttaatgccccggctgcagccttcggaggccagaatttccaggcccaacag
tttgctccccctaagggtggtgcacagactgctgcgattccccctttccccttccccctc
ccccccgcaccggctccgcagcagcatcctccaccgctggtgccgtaccccatgcctccc
cagttctctcagtaa
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