Gasterosteus aculeatus (three-spined stickleback): 120827711
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Entry
120827711 CDS
T07457
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04382
Cornified envelope formation
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120827711 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120827711 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120827711 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120827711 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120827711 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120827711 (col4a3)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120827711 (col4a3)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120827711 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120827711
NCBI-ProteinID:
XP_040046735
LinkDB
All DBs
Position
I:complement(394551..418395)
Genome browser
AA seq
1527 aa
AA seq
DB search
MGYPGFSGVPGYAGLQGQQGPRGAKGDTFVFPPTRDIKGATGPPGRDGEDGLGGDPGEPG
LSGPPGSAGLPGTPGFPGLQGEKGQEGPSPVIPGPSGQKGDRGPPGIPGQKGIKLYAEGP
KELKGEPGDVGLKGCQGFPGVPGTLGVKGEKGGRGDPGSLGKPGKDGVFGELGQQGDPGD
RGYLGPPGIEGATGEKGERGSPGFPGELLFRHHYLKGQRGVPGPRGPEGVQGEQGFIGFP
GLQGEPGVASTSPPGPQGPPGLAGPKGDPGGPGPLVFGPLGEVGALGAGGAEGEPGEPGI
PDFVPGGVGRPGAKGVKGPLGFPGARGEEGPAGEKGQVCPDIQGPAGKPGRRGEDGAPGS
VGSPGAKGQTGYNGVQGPKGQQGLIGNKGLQGPQGPIGDPGIMQRVGVKGEEGDRGESGP
PGPDGRDGSPGFTGRKGALGQKGNPGPLGQKGNMGRTGDTGPRGLMGQLGPSGPLGIGDP
GPVGSKGNVGVLGPRGDPGNPGEKGSPREIMTSPGDPGPKGEKGLPGIPGAKGVTGSVGA
PGFVGPMGEKGDDGFSVEGPLGFPGFKGLKGPPGTPGVPNFGIKGRAGPSGPPGIPGPKG
NIYRGICFPGQQGQLGPQGEDGSVGPQGDPGPEGSDGVPGPVGQVGYPGPKGHSGLNGLP
GPGGPVGRCFPGAPGPDGEEGQTGIFGFTGMRGLKGDRGDPGRPGFGAPGPQGSYGVPGF
DGTPGPVGVIGLKGLRGTNGEPGSTGTRGDLGPPGALGSPGDDGRPGEPGRDGAKGQTGA
DGSGGSQGPQGPPGDRGEPGPKGVRTAVDIYGEPGEPGAPGSTGVTGSKGESGLTGPQGL
DGRTGRPGDGGPQGPPGDTGRGGWRGPPGPCGLNGNQGDMGMPGFKGEKGCTGPCGKPGP
DGIPGPAGLKGSKGESSPSGPGSKGPPGAKGNPGCSGGPGTKGEPGDVGDLGPSGACGPC
GPKGALGAPGCRGSPGTQGEKGCDGPPGINVLPGPAGLTGTKGAPGVPGPAGSRGNQGQD
GIPGPPGEKGAMGGSRAGPRGADGKTGSPGYPGEPGSPGACGPPGPNGPGGNPGCYGSPG
PPGPSGPVGKEGVCIEGSKGNNGIPGQRGPKGQSGLKGPPGSPGPGFKGEKGSKGATGFQ
GPPGYPGEQGPPGKPGEDRPPGPRGPVGQMGPTGVTGPVGIKGEAGQAGFVGSQGPPGPP
GRRGQKGEDVPLVPGDQGPAGPPGLKGEKGPPGARGIPGGPGLKGVRGSAGRRGPGGRPG
VMGDQGDQGVDGLKGVPGPKGSLGAKGAPGRPGPCGNPPDTNGFMFTRHSQNLLVPECPA
GSAELYSGYSLLFINGNNRAHGQDLGSLGSCLPRFTTMPFLFCNTDSTCRYASRNDYSYW
LSTDQPLPSSVPLISGDSLRNYISRCSVCEARANVIAVHSQTSLVPDCPSGWDALWFGYS
FVMETGVGAEGSGQPLASPGSCLENFRKIPFIECHGRGTCNYYTDSYSYWLAALNPADMF
SKPTPQTDSGDFPARLISRCRVCMKQL
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgggttaccctgggttttccggggttccgggatacgccggcctacagggtcaacaagga
ccacgaggggcaaagggtgacacctttgtcttcccgcccactcgggatattaaaggagca
acgggaccaccaggacgagacggagaagacggcctgggtggagatccaggtgaaccaggc
ctgtcaggaccaccaggatccgctggacttccaggaactccagggtttccagggttacaa
ggagagaagggacaggagggtcccagtccggtgataccaggtcccagtggacagaagggg
gatcgcggaccaccagggatccctggacagaaaggaatcaaactgtatgccgaaggaccg
aaagaactgaagggggaaccaggtgacgttggactgaaaggttgtcaaggatttcctggc
gtgccggggacactaggggttaaaggagaaaaaggaggccgaggcgatcctggctcacta
ggtaaacctggaaaggatggagtctttggagagctgggacaacagggagaccccggggat
cgcgggtaccttggtcctcctggtattgaaggagcaacaggagagaaaggtgaacgtggt
tctccaggttttccaggagagttgcttttcagacaccattacctgaagggccagcgcggt
gtccccggacccagaggacccgaaggagtccagggagaacaagggttcattggttttcct
ggactccagggtgagccaggtgtggcctcaactagtccaccgggcccccaggggcctccg
ggcttagccggacccaaaggagacccaggggggccggggcccctcgtctttgggccccta
ggagaagtcggagcacttggagctggtggagctgaaggagaaccgggagaaccgggaata
ccagattttgtgccgggaggggtcggtcgtccaggagctaaaggtgtgaaaggtccgttg
ggtttcccaggagctagaggagaggaaggaccggcaggtgagaagggacaggtgtgtccc
gatatccaaggacctgcaggtaagccaggaaggcgaggtgaagacggtgcaccaggatcg
gttggttctccaggagccaaaggtcaaacagggtacaacggtgttcaaggaccaaagggt
caacagggcctcattgggaacaagggcctccagggaccacagggacccatcggtgaccct
ggcatcatgcagagggtcggtgtgaagggagaggagggagaccggggggagtcaggacct
ccgggtccagacgggagagatgggtctccgggatttaccggacgaaaaggtgctctggga
cagaaagggaaccctggccctctggggcaaaaaggcaacatggggcgtactggtgacacg
ggtcccagaggactaatgggtcagctggggccgtcgggaccgctcggaattggggaccca
ggacctgtggggtctaaaggcaacgtaggggtgctaggacctcgaggagatcctgggaat
ccaggggaaaaaggttctccgagggaaatcatgacctctccaggagacccaggaccgaaa
ggagagaaaggtttacctggaatccctggagccaaaggtgtgacaggaagtgtaggtgct
ccaggattcgttggcccaatgggagagaagggagatgatgggttctctgtcgaggggcct
ctaggttttccagggttcaaaggactcaagggcccccccggaactccaggtgtaccaaac
tttggtattaagggacgtgcagggccatcgggccccccagggatcccgggcccgaagggg
aacatatacaggggtatctgttttccaggtcagcagggtcagttgggcccccagggggaa
gacggctccgtgggtccccaaggagatcccggacccgaaggatcagacggagttccggga
cctgtgggacaagttggatatcctggacccaaaggacatagtggcctgaatggtttacct
ggtccgggtggtcctgttggacggtgttttcctggagctcccggacccgatggagaggag
ggacagacgggtatcttcggatttacagggatgcggggtctaaagggcgacaggggggac
cctggccggcctggctttggggccccggggcctcaggggtcttatggagtgcccggcttt
gatgggactccaggtccagtaggggtaattggactgaagggcctgagggggaccaatggg
gaaccgggaagtacaggcaccagaggagacctgggtcccccgggggccctcgggagtccg
ggggatgatgggagaccaggagagcccggaagagacggagcaaaaggtcaaacaggtgca
gacgggtctggtggttcccaagggcctcaggggcccccgggggaccgaggagaacccgga
ccaaaaggagtccggacagccgttgatatctatggagagcctggagaacctggagcccct
gggtccaccggtgtcaccggtagcaaaggagaaagcggcctcacggggccacagggtctc
gatggcagaaccggcagacctggtgacggcgggccacaaggaccacccggagacacaggc
agaggtggatggagaggtcctcctggtccttgtggactcaatggtaaccagggagacatg
gggatgccaggttttaagggtgagaaaggttgcactgggccttgtgggaaacccggacca
gatggaataccaggcccagcaggactcaaaggttctaaaggagaatcgagtccttccgga
cccgggtctaaagggcctccgggagcgaagggaaatccaggatgttcaggaggaccaggt
actaagggtgaacccggcgatgttggagacttgggtccctccggagcctgtggcccatgt
ggccccaaaggagccctcggagccccaggatgcagaggttctcctgggactcaaggtgaa
aagggttgcgacggtcctcccgggataaatgtcctcccaggacctgctggcctaacaggt
acaaagggggctcctggagttcctggtccagctggttccagaggaaaccagggacaggac
gggataccaggacctcctggagaaaagggagcaatgggtggttccagagccgggccccgg
ggcgcagatgggaaaactggttcacctgggtaccccggagagccgggttctcccggtgct
tgtggtccacctggtccgaacggtcccggaggaaacccaggttgttatggttctcctgga
cctcctggtccttctggtcccgttggcaaggagggagtctgcatagagggaagcaaaggc
aacaacggaatcccaggacaacgaggaccaaaaggtcagtcaggccttaagggccctcct
ggttctccaggtcctggttttaaaggagagaagggatctaaaggagcaacaggtttccaa
ggaccacctggttaccctggtgaacagggacctccaggcaaaccgggtgaagatagacca
ccagggcctcgaggaccagtaggccagatgggacccactggtgtcactggacccgttggt
atcaagggggaggcgggacaggcaggtttcgttggctctcagggtcctccagggccacct
gggaggagaggccagaagggagaggatgtgccgctggtgccgggagaccaaggcccagct
ggaccgccggggctcaaaggagaaaagggacccccgggggcccgagggattcctggaggt
ccaggtctgaagggcgttagagggtcggctggtaggagaggaccgggggggcgtcccgga
gtgatgggggatcagggcgaccaaggggttgacgggttaaagggtgtcccaggtccgaaa
ggttcgcttggtgctaaaggtgctccgggccgaccgggtccttgtggcaacccaccggat
accaacggcttcatgttcacaagacacagccagaatctccttgtcccagaatgcccggca
ggatctgccgagctgtacagtggatactcgctgctcttcatcaatgggaacaacagggcg
cacggacaagacctgggttcactcggtagttgtctacctcgtttcacaaccatgcccttc
ctgttctgtaacaccgacagcacctgccgctacgcttcccgtaacgactactcctattgg
ctgtccaccgaccagccgctgccaagcagcgtgccgctaatctccggggactcactgagg
aattacatcagccggtgttccgtgtgcgaggccagagccaacgtgatagcagtccacagc
cagacaagcctggtcccagactgcccctcgggctgggacgccctctggtttgggtactcc
tttgtcatggagacaggggtgggggccgaggggtcaggtcagcctctggcgtcgcccgga
tcctgtctggagaacttccgtaagattcctttcatcgagtgtcacggcagaggaacctgc
aactactacacagactcctacagctactggctggctgccctcaacccggcagacatgttc
agtaaaccgacgcctcagactgactcaggagactttccagctcgtttgatcagccgatgt
cgagtctgtatgaagcagctgtga
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