Gasterosteus aculeatus (three-spined stickleback): 120828035
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Entry
120828035 CDS
T07457
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2C-like
KO
K05211
glutamate receptor ionotropic, NMDA 2C
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04020
Calcium signaling pathway
gat04080
Neuroactive ligand-receptor interaction
gat04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
120828035
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
120828035
04082 Neuroactive ligand signaling
120828035
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gat04040
]
120828035
Ion channels [BR:
gat04040
]
Ligand-gated channels
Glutamate (ionotropic)
120828035
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
NMDAR2_C
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
120828035
NCBI-ProteinID:
XP_040047260
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All DBs
Position
11:17088500..17133824
Genome browser
AA seq
1409 aa
AA seq
DB search
MGVRLGCLTDSPWWLLLLLLRGASLCSGRPFGVPAPSVNVAVVFSGSAYQAEIKGRLSRE
NFLDLPLEVNPITVLVNNTNPRALLTRICDTLSTNRVHGVVFEDNVGSEAVAQILDFIST
QTAVPIVGISGGSAVVLPYKGEGSNFLQLGSSIEQQINGMFKVMEEYNWDSFVVITSLYP
GYESYVDYVKSFTDTSYFTWELQDVLTFDMSADGMNDVRARRLLQQIDAQVLLVYCSHEE
AQYLFSMAAESRLVGPGYIWILPSLAVGNPDVPPPESFPVGLIGIITDRWRMSLRKRVRD
GVAIVVKGVQSFRRQRGFVPEGHSDCHNPARPPATNDTLFRHMLNVTWEHNDFSFNSNGY
LVNPAMIIITLDRERLWDKVGTYEMGIMQMRYPVWPRYGSYLEPVSDYRHLTVATLEERP
FVIVEAVDPLTGTCVSNTVPCRRQSNKTETIVGHTEAYTKLCCKGFCIDILKKLSRTIKF
SYDLYLVTNGKHGKLVRGIWNGMIGEVFYKRADMAIGSLTINEERSEIIDFSVPFVETGI
SVMVARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAITVFVFEYCSPVGYNRSLVSAKE
PGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM
IQEQYIDTVSGLSDKKFQKPQEQYPPFRFGTVPNGSTERNIRSNYPEMHSHMVKYNQKGV
EDALNSLKTGKLEAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKR
LIDLALLQFLADGDTQKLQTVWLTGICRNEKKEVMSSKLDIDNMAGVFYMLLVAMGLSLL
VFAWEHLLYWKLRHSVRKAERLDFLLAISRGIYSCFSGVEQTDHSGSMPSPDVTANYTQA
NMLKMLKTAKDMVSSARVENSLDNATKTIENWSRRGVDNVRLGLPPRVTAADVTHGRLPY
ISSITDNHSPYSQRALTPTFPLHYGDATIQPLLEKPCVVTRPNALRYTLPARNAQHLLER
TLPISSLSSPHIAMRDPSPSAASNPHHGGRLYVENQARRPTSPFAPYREFQVPDIYVEHK
GPLRRKFSYPPDCVSRKRRSHGYAFDAADPRARGDYDEPRPCLAELRANHLLSNHAPFAT
AMACTRGHYAGGSASCNSCTKSYLEPEMDDLPLLGKDKLNRRASFLKATWGNDRIHQVDE
TKASTSASSARVDMPDLFPRVLVANQKPNKLYGSLGHNLSCYPLAAEPAYLDPAHMGSYP
YKQKLKYSESTRLPSYREAILQNTAALRRSSSTVVHRHYSTYLNSYTDLPVYVGPLAQRP
GQFYNGSKDMCHLFPCASHCPDNATMLPRMGDRQVVYHNNMFGACDATGKREDPGSGGRE
RRQVLVARRVNSPYVPKPWGRVSSLESEV
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcgtctgggctgtttgaccgactccccgtggtggctgctgctgttgctgctc
cgcggcgcctccctctgctccggccggccgttcggggtccccgcgccctccgtgaacgtg
gcggtggtcttcagcggctcggcctaccaggcagagatcaaggggcggctcagccgggag
aacttcctggacctgcccctggaggtgaaccccatcaccgtgctggtcaacaacaccaac
ccgcgggcgctgctcacccgcatctgcgacaccctctccaccaaccgcgtgcatggcgtg
gtgttcgaggacaacgtgggctccgaggccgtggcgcagatcttggacttcatttccacg
cagacggccgttcccatcgtggggatcagcggcggctcggccgtcgtgctgccgtacaag
ggcgagggctccaacttcctccagctgggctcctccatcgagcagcagatcaacggcatg
ttcaaggtgatggaggagtacaactgggacagcttcgtggtcatcaccagcctgtacccg
ggctacgaaagctacgtggactacgtcaagtccttcacggacaccagctacttcacgtgg
gagctgcaggacgtgctgaccttcgacatgtccgccgacggcatgaacgacgtgcgggcg
cggcgactgctgcagcagatcgacgcccaggtgttgctggtctactgctcccacgaggag
gcccagtacctcttcagcatggcggccgagtcgcggctggtggggccgggctacatctgg
atcctccccagcctggcggtggggaacccggacgtccccccgcccgagagcttccccgtg
ggcctcatcggcatcatcacggaccgctggaggatgagcctgaggaagagggtgcgggac
ggcgtggccatcgtggtgaaaggcgtgcagagcttccggagacagaggggcttcgttccc
gagggccacagcgactgccacaacccggcccggccgccggccaccaacgacaccctcttc
aggcacatgttgaacgtgacctgggaacacaacgacttctccttcaacagcaacggctac
ctggtgaacccggccatgatcatcatcactctggaccgagagcgcctgtgggacaaggtg
gggacctacgagatggggatcatgcagatgagatacccggtgtggccccggtacggctcc
tacctggagccggtgtcggactacaggcacctgacggtggccacgctggaggagaggccc
ttcgtcatcgtggaggcggtggacccgctgaccggcacctgcgtcagcaacaccgtgccc
tgccgccggcagtccaacaagaccgaaaccattgtgggtcacaccgaggcctacaccaag
ctgtgctgcaaaggcttctgcatcgacatcctgaagaagttgtcccgcaccataaagttc
tcctacgacctctacctggtcaccaacggcaagcacggcaagctggtccggggcatctgg
aacgggatgatcggagaggtgttctacaagcgggcggacatggccatcggctcgctgacc
ataaacgaggagcgctccgagatcatcgacttctccgtgccgttcgtggagacgggcatc
agcgtgatggttgccaggagcaacggcaccgtctcaccctcggccttcctagaaccgtac
agcccggcggtctgggtgatgatgtttgtcatgtgtctcaccgtggtggccatcacggtc
ttcgtctttgagtactgcagtcctgttggatacaaccgcagcctggtcagtgccaaagag
cccgggggccccaccttcaccatcgggaagtccgtgtggctgctgtggggcatcgtcttc
aacaactcggtgcccatcgagaacccgaagggcaccaccagcaagatcatggtgctggtc
tgggccttcttcgccgtcatcttcctcgcctcctacaccgccaacctggcggccttcatg
atccaggagcagtacatcgacaccgtctccggactgagcgacaaaaagtttcaaaagccg
caagagcagtaccccccgttccgcttcggtacggtcccgaatggcagcacggagcgcaac
ataaggagcaactaccccgagatgcactcccacatggtcaagtacaaccagaagggagtg
gaggacgccctcaacagcctcaaaaccgggaaactggaggccttcatctacgacgccgcc
gtgctcaactacatggccggcaaagacgagggctgcaagctggtgaccatcggcagcggg
aaggtgtttgccaccaccggctacggcatcgccctgcagaaggactcacgctggaagcga
ctcatcgacctggccctgctgcagttcctggctgatggcgacacccagaagctgcagacc
gtctggctgacgggcatctgccgcaacgagaagaaagaggtgatgagcagcaagctggac
atcgacaacatggcgggggtcttctacatgctgctggtcgccatggggctcagcctgctg
gtgttcgcctgggagcacctgctctactggaagctgcgccactcggtgcgcaaggcggag
cgcctggacttcctcctggccatcagcagaggaatctacagctgcttcagcggggtggag
caaaccgaccacagcggcagcatgccgagtcccgacgtcactgccaactacacacaagcc
aatatgctgaagatgctgaagacggccaaggacatggtgtcctccgccagggtggagaac
tctctggacaacgccaccaagacaatagagaactggagcaggcggggggtggacaatgtg
cgactcggcctgccccctcgagtgacggcggcggacgtgactcacggccgcctgccgtac
atctcaagcatcacggacaaccactcgccgtactctcagagggccctcacccccaccttc
cccctccactacggggacgccaccatccagccgctgctggagaagccctgcgtagtgacc
cgacccaacgcgctccgctacacgctgcccgcccgcaacgcccagcacctactggagagg
accctgcccatctccagcctgagcagtcctcacatcgccatgcgggacccgtccccctcc
gccgcttccaacccccaccacggcggcaggctgtacgtggagaaccaggcccggcgcccg
acgtccccgttcgctccttacagggagttccaggtgcccgacatctacgtcgagcacaag
gggccgctgcggaggaagttcagctacccgccggactgcgtgagccggaaaaggcggtcc
cacggctacgcgttcgacgccgctgacccccgagcgaggggagactacgacgaacctcgg
ccctgcctcgccgagttgagggccaaccacctcctgagcaaccacgcccccttcgccacc
gcaatggcgtgcactcggggacactacgcagggggcagcgccagctgcaactcctgcaca
aagtcctacctggagcccgagatggacgacttgccactgctggggaaggacaagctcaac
cgccgcgcctccttcctcaaagccacgtggggcaacgacaggatccatcaggtggacgaa
acaaaggcctccacctccgcgtcctccgcccgcgtggacatgcccgacctgtttcctcgg
gtgctggtggccaaccaaaagcccaacaagctatacggcagcctggggcacaacctgtcc
tgctacccgctggctgccgagcccgcgtacctggacccggcccacatgggatcctacccc
tacaagcagaagctcaagtactccgagtccaccaggctgccctcttacagggaggccatc
ctgcagaacaccgctgccctgcgccgctcctcctccacggtggtgcacagacactactcc
acctacctgaactcgtacacagacttgccggtgtatgtggggccgctggcccagagaccc
ggccagttctacaacggctccaaggacatgtgccacttgttcccctgtgcgagccactgc
ccggataacgcgacgatgctgccccgcatgggggaccgccaggtagtttatcacaacaat
atgttcggggcctgcgacgccacagggaagagggaggacccgggctccgggggccgagag
cggaggcaggtgttggtggcgcgcagagtcaacagtccctatgtgccaaagccctggggc
agggtgtccagcctggagtccgaggtctga
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