Gasterosteus aculeatus (three-spined stickleback): 120828197
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Entry
120828197 CDS
T07457
Symbol
smurf1
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF1 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04120
Ubiquitin mediated proteolysis
gat04137
Mitophagy - animal
gat04144
Endocytosis
gat04340
Hedgehog signaling pathway
gat04350
TGF-beta signaling pathway
gat04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120828197 (smurf1)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
120828197 (smurf1)
04350 TGF-beta signaling pathway
120828197 (smurf1)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
120828197 (smurf1)
04137 Mitophagy - animal
120828197 (smurf1)
09144 Cellular community - eukaryotes
04520 Adherens junction
120828197 (smurf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120828197 (smurf1)
04121 Ubiquitin system [BR:
gat04121
]
120828197 (smurf1)
03029 Mitochondrial biogenesis [BR:
gat03029
]
120828197 (smurf1)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
120828197 (smurf1)
Membrane trafficking [BR:
gat04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
120828197 (smurf1)
Autophagy
Mitophagy
Other mitophagy associated proteins
120828197 (smurf1)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
HECT type E3
120828197 (smurf1)
Mitochondrial biogenesis [BR:
gat03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
120828197 (smurf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120828197
NCBI-ProteinID:
XP_040047548
LinkDB
All DBs
Position
XI:complement(5660063..5673478)
Genome browser
AA seq
739 aa
AA seq
DB search
MSNPGTRRNGSSIKIRLTVLCAKNLAKKDFFRLPDPFAKVVVDGSGQCHSTDTVKSTLDP
KWNQHYDLYIGKTDSITISIWNHKKIHKRQGAGFLGCIRLLSNAISRLKDTGYQRLDLCK
LNPSDSDAVRGQIVVSLQTRDRIGSGGPVVDCRGLLENDGPVFEGCFSEEPLPYSDPTGA
AGGGNCRLDSPGQEGSLQTQRIRGQDSRGHGHTPQNRPHGHQPLDLPEGYEQRTTVQGQV
YFLHTQTGVSTWHDPRIPRDLASVSCEELGPLPVGWEVRSTVSGRIYFVDHNNRTTQFTD
PRLHTIISLPLPLLATSSQQSQAKESSQAPLMDVGGEEGVGGGVGGGGEGDVAARYERDL
VHKLKLLRHELSLQQPQAGHCRIEVSREEIFEESYRQIMKMRPKDLKKRLMVKFRGEEGL
DYGGVAREWLYLLCHEMLNPYYGLFQYSTDNIYTLQINPDSSINPDHLSYFHFVGRVMGL
AVFHGHYINGSFTLPFYKQLLGKPIQLNDLETTDPELHKSLVWILENDITSVLDHTFCVE
HNAFGKFSQHELKPNGRNLPVTEENKKEYVRLYVNWRFMRGIEAQFLALQKGFSELIPQH
LLKPFDHKELELIIGGLGKIDLADWKTNTRLKHCTSESNVVRWFWQAVEAFSEERRGRLL
QFVTGSTRVPLQGFKALQGSTGSAGPRLFTIHLIDANTDNLPKAHTCFNRIDVPPYESYE
KLYEKLLTAVEETCGFAVE
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcctgggactcggaggaacgggtccagcatcaagatccgactgacagtgtta
tgtgccaagaacctcgcaaagaaagacttctttcgcctgccagatccatttgccaaggtt
gtggtggacggatcaggccaatgccactccacagatacagtcaagagcacactggacccc
aaatggaatcagcactatgacctctacatcggtaagacagactccatcaccatcagcata
tggaaccacaagaagatccataaacgacaaggggcgggcttcctgggctgcatacgactg
ctctcaaacgccatcagccggctaaaagacacggggtaccagcgtctcgatctatgtaag
ctgaacccgtcggacagtgacgcagtgcgggggcagatagtagtgagcttacagacgaga
gaccgcatcggcagcggaggtcccgtggtggactgcagggggctgttggaaaacgatggg
cctgtcttcgaggggtgttttagtgaagagccgctgccctactcggaccccactggggcg
gcggggggcgggaactgtcgactcgactctcccggccaggagggcagtcttcagacgcag
cgaatcagagggcaggactccagaggccatggccacacccctcagaacagacctcatggg
caccaaccgcttgacctgccggagggatacgagcaacggacaacggtgcagggccaggtg
tacttccttcacacacagacgggtgtcagcacctggcacgaccctcggataccgcgggac
ctcgccagcgtgagctgcgaggagctcgggccgctgccggtcggctgggaggtccggagc
acggtgtcgggccggatctactttgtggaccacaacaaccgaaccacgcagttcaccgac
ccgcgcctacacaccatcatcagtcttccgcttccccttcttgccacctccagccagcag
tcccaagccaaggaatcttcacaagcccccctgatggatgtggggggcgaggaaggggta
ggtggaggagtcggcgggggaggcgaaggagacgtggcagcgcgctacgagcgggacttg
gtccacaagctgaagctgctccgccacgagctgtcgttgcagcagcctcaggcgggacac
tgtcgcatagaggtgtcccgggaggagatctttgaggagtcgtatcggcagataatgaag
atgaggcccaaagacctgaagaagcgcctgatggtgaagttcaggggagaggagggcctc
gactatgggggggtggccagggagtggctgtacctgctgtgtcatgaaatgttgaacccc
tattacggcctgttccagtactccacagacaatatctacacactacagatcaaccccgac
tcctccatcaaccccgaccacctgtcatattttcactttgtgggccgtgtgatgggcctg
gcagtttttcacggccactacatcaacgggagcttcacgctgcccttctacaagcagctg
ctaggcaaacccatccagctcaacgacctggagaccaccgacccggagctgcacaagagc
ctcgtctggatattagagaatgacatcacttcagtcctcgaccacacgttctgcgtggag
cacaatgccttcgggaagttctcacaacacgaactcaaacctaatggccgcaatctcccc
gtcaccgaggagaacaaaaaggaatacgtgaggctttatgtgaactggaggttcatgcgt
ggaattgaagcccagtttctggctctacagaagggcttcagtgagctcatcccccagcac
ctcctcaaacccttcgaccacaaagaacttgagctgatcatcggaggtttggggaagata
gatcttgcggactggaagacaaacacgcgcctcaagcactgcacgagtgaaagcaacgtg
gtgcggtggttctggcaggcggtggaggccttcagcgaggagaggagaggacgcctcctg
cagtttgtcacaggctccaccagggtccccttacaagggttcaaagcgcttcagggttct
acaggttctgcaggaccaaggctcttcaccatccacttgatagacgccaacacagacaac
ctgcccaaggctcacacatgtttcaaccggatagacgtccctccctacgagtcttacgag
aaactctacgagaaactgctgacggccgtggaggagacgtgcggctttgccgtggagtga
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integrated database retrieval system
