Gasterosteus aculeatus (three-spined stickleback): 120828200
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Entry
120828200 CDS
T07457
Symbol
col4a4
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120828200 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120828200 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120828200 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120828200 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120828200 (col4a4)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120828200 (col4a4)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120828200 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120828200
NCBI-ProteinID:
XP_040047562
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All DBs
Position
I:424492..458573
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AA seq
1668 aa
AA seq
DB search
MLLTSCSPPCCSTWLWCLLMVLTAPPPSLGGDHNEMCAGRDCSTCQCFPAKGARGSPGPL
GKQGPQGPPGFPGPLGALGQKGHRGDEGLPGDGGTKGDAGNGGVPXFSGLEGIPGHPGPA
GGPGFPGLDGCNGTRGVRGDPGLPGGTGPDGEPGSEGLKGFPGDPAVYFVQYPGVPGDAG
SVGLPGRQGEPGLPGPAGDLGPSGPDGTNGFPGQQGSRGPPGERGRSLPGQKGDEGDQGL
QGQPGPFEYVDPPEDLYLKGDKGSQGPKGVCGRQGMSGLDSLTGIKGEKGIVGFPGSRGF
SGNPGRPGERGFKGIQGSPGLPGLIGRDGPKGMLGNPGAKGLPRDVKVTHKGDFGDPGAP
GPRGPPGDVGTMGAHGPPGARGRSIPGSAGVVGSRGAQGCRGDKGDPGQVYEGVPTPGEP
GKPGSPGTKGLKGQQGIPGSYCVPGAPGEYGDKGDRGPTGVQGFQGIKGSRGDCSCGPPD
KLMGPPGRVGDPGSPGSPGPPGAPGLRGDNGFPGDAGERGPQGLGGFPGVKGFKGQKGDF
SVVDFKGEKGNRGQSGPLGQQGFLGRRGLDGPQGGPGNPGPEGESINSSPGDRGLPGLPG
PKGLSGAPGPPGRGVVGAVGQRGGPGDPGPTGFPGAPGPKGVRGDNLPCVPRNPGPPGEK
GDTGDEGYRGLPGPPGFRGLSGPDGPKGDRGQPGLPGPRGREGLQGCVGDTGEEGREGIS
FSGDPGVPGLPGSSGLRGPAGDSTVGPSGPIGFPGRPGPQGPKGVPGPPGINGLEGLPGL
AGGPGVKGQRGREGAPGITGPRGPTYSSCDAGKPGSRGLPGPQGPVGPPGFCGEKGEIGE
GGPPGFGPQGPPGTPGYLGLPGYQGPQGSPGPCGDSGLPGLDGPKGLTGPVGHDGGLGGP
GRTGILGAPGRMGERGFNGRDGSPGCEGQKGEKGFKGVPGPPGETEVVPIKGRRGKQGTP
GINGFPGARGSKGVQGAAGKPGYRGINGPMGIAGLPGPEGPFGPPGPPGSPGRNGPPGFI
GFPGGTGDPGDLGCPGKLGASGHPGCAGPKGDKGDSISGIGPPGDKGPPGDFGSLGPPGP
PGEPGRVGFIGSPGLRGCKGDPGDQGQLGPTGVVGPTGPRGRLGFPGLPGKAGADGPPGP
PGFHGLPGPPGPLGLHGLDGLKGVKGDMGIRGLGEPGPPGFIGLPGEKGPPGPPGYGGSS
PPGPPGPKGPPGPTGPPGNLGPPGKPGPDCKVLIPGPRGDPGPTGKDGETGCAGEVGDPG
PNTPLSGDVGDNGNPGCEGPGGPQGPQGPRGLPGQPGGPGEKGTRGSTGLMGVSGNRGPK
GCTGPSGTTGPKGSTGLTGPKGEPGRVLSCLPHSPAPPGLPGNPGPPGPDGDIGIEGVFG
HIGPKGRKGDFGSEGPIGVEGVPGLDGGRGEPGRPGENGVTGAKGYSGPMGDRGPPGSMK
NLNSGFLLVLHSQSNAIPSCPVDMRVLWVGYSLLYLEGQEKAHTQDLGQAGSCMRVFSTM
PFSSCNMGTCSYASRNDKSYWLSTTAAIPSLPVGGASIKEHISRCIVCEAPSSPVTLHSQ
TANQPDCPPDWRSLWTGYSFLMHTGAGDEGGGQSLTSSGSCLTDFRAQPFVECQGPRGTC
HYFANIYSFWLTRVEATAPAHEQGSSTTLTNSWQQRESIGRCSVCMRK
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgacttcctgctctcccccctgctgctccacctggctctggtgcctcctgatg
gtcctgacggctccgcccccttctctcgggggcgaccacaacgagatgtgcgccggcagg
gactgctccacctgtcagtgtttccccgccaaaggagcaaggggttctccgggccctctg
gggaagcaggggcctcaggggcctccgggcttcccaggccctctgggggctctgggacag
aagggccaccgaggagacgagggactgccgggcgacggtggaacgaaaggagacgcggga
aacggtggcgttccgnngttttccggtttggaaggaatcccgggtcacccgggtccggct
ggaggtcctggttttcccggtctggatgggtgtaacgggaccagaggagtgagaggagac
cctgggcttcccggaggaactggacccgacggagaaccgggttctgaaggactgaaaggg
ttcccaggagatccagccgtctactttgtacagtaccctggagtacctggagacgccggt
tccgttggacttccgggtcgtcagggggaaccaggtctccctgggccggctggggatctg
ggtccatcgggaccagatggaaccaacggtttcccgggtcagcagggttccaggggtcca
cctggagaaagaggtcgttctctgccaggacagaaaggagacgagggggatcagggcctc
cagggtcaaccgggtccatttgagtacgtcgaccctccagaagacctatacctcaaagga
gataagggttctcaggggcctaaaggagtctgtggacggcaaggaatgtcgggtttggac
agtctcaccgggatcaaaggagagaaagggattgtgggatttcctggttccagggggttt
tcaggtaaccctggtcgtcccggagaaagaggattcaaggggattcaagggagtccaggt
ctgccgggtctaattgggcgagatggtccaaagggcatgctgggaaatccaggtgccaaa
ggcctccccagggacgtgaaagtaacacacaaaggtgacttcggagatcccggggccccc
ggaccaaggggccctcccggagacgtcgggacgatgggagcgcacggcccccccggagct
cgcggcaggtctatacccggttcggcaggcgtcgtgggttcgaggggagctcaaggatgc
agaggggacaaaggagatccgggccaggtgtacgaaggcgtacccacacccggagaacct
ggaaaacctggaagtcccggcacaaaaggactgaaaggacaacaggggattccaggtagt
tactgtgtgcccggggccccgggagaatatggggataaaggcgatcgggggcccacgggg
gtccaaggctttcaagggatcaaaggtagccgcggcgactgttcttgtggtccaccggac
aaactgatgggccctcccggccgtgtgggtgatcccgggtctccagggtctccgggacct
ccgggggccccagggctgagaggagacaatggttttcctggagacgcgggagaacgtgga
ccgcagggtctgggtggatttccaggtgtcaaagggttcaaaggtcaaaagggggatttc
agtgtggtggattttaaaggtgagaaaggaaaccggggccagtcaggccctctaggccaa
cagggttttttagggagaagaggactggacgggccccaggggggccctggaaaccctggc
cctgagggagaaagtattaatagttctcctggagatagaggcctccctggactcccaggg
ccaaagggcttgtcaggagctcccgggcccccgggtcggggtgtagttggagcagtggga
cagcgtgggggtcccggggacccgggaccaacgggcttccccggagccccagggccaaag
ggtgttagaggggataatctgccctgtgtgcccagaaacccaggccccccgggagagaaa
ggagacactggagatgaaggttacagagggctgccaggtcctccagggtttcgtggcctt
agtggacctgatggacctaaaggtgacagaggtcagcctggactgcctggaccacgtggt
cgtgaaggacttcaaggttgcgttggtgacactggagaagaaggacgtgaaggcatcagc
tttagtggagatccaggtgttccggggctccctggctcttctggactcaggggcccagcg
ggggactctactgttgggccctcaggacccattggcttcccgggacgaccgggccctcag
ggacctaaaggggtccccggcccccccgggatcaacggactagaaggactccccggtctg
gcagggggccccggtgtcaagggccagagaggacgggaaggggccccaggtataacaggc
ccccgggggcccacatacagctcctgtgacgcagggaagcctggttccaggggccttcct
ggccctcaaggaccagtaggacctccaggtttctgtggggagaagggtgagatcggcgag
gggggtcctccgggttttggccctcaaggccctccaggtacaccgggttatctgggttta
cctggttaccaggggccacagggctcccccggtccttgtggagactctggacttccaggg
ctggatggtccaaaaggtcttacggggccggtaggccatgacggaggcctggggggccct
ggtcggaccgggatcctcggagctccgggtaggatgggtgagagagggttcaacggacga
gacggaagtcctggatgtgagggccagaaaggagagaagggctttaaaggggtcccgggg
cctccgggagagaccgaggtggtcccaatcaagggaaggagaggaaaacaaggaacgcct
ggcatcaacggttttcctggagcacgaggaagtaaaggtgtgcaaggagctgctggtaag
ccaggttatcggggcatcaacggacccatgggcatcgcaggactcccaggacccgaaggt
ccgttcgggccaccaggacctccaggatcacccggacgcaatggaccacctggattcatc
ggcttcccaggaggaaccggagatccgggtgacctgggatgtccggggaaattaggagca
tccggtcacccaggatgtgctggacctaaaggtgataaaggagactccatcagtggtatt
ggtccacctggagacaaagggcctcctggagacttcgggtccttaggacctcctggacct
ccaggagaaccaggtagagttggtttcattgggtctccggggctgagaggatgcaaagga
gatccaggagatcaagggcaactgggcccaacaggtgtggtcggtcccactggtcccaga
ggtcgtttaggttttccaggtctacctggtaaagccggtgctgatggtcctccgggacct
ccaggcttccatggtctcccaggtcctcccggaccgctcggcctccacggactagacgga
ctgaaaggagtcaagggggacatggggatcagaggtttgggtgaaccggggcctcctggt
tttattggtcttccgggggaaaaaggtcctcctggtccaccgggatacggtggttcatcc
ccacccggcccaccaggaccaaaaggccccccaggacccacaggaccacctgggaattta
ggacctccgggtaaacctggaccggactgcaaagttctgatcccggggcctcgtggagat
cctggtcctactggaaaagacggagagacagggtgtgccggtgaagttggggacccaggg
ccgaacactccgctatctggtgacgtcggggacaacgggaacccaggatgcgaggggcct
ggaggcccacagggacctcaggggcccagaggactgccgggacagcccggaggtccagga
gagaaaggtacacgggggtccaccggtctgatgggagtgtctgggaatcggggtcctaaa
ggctgcactggtcctagtggaactactggaccaaagggttccaccggcctgacgggtcca
aagggggagccgggacgggtcttgtcctgcctccctcattccccagcgccgccaggtctg
ccggggaaccctggccctcctggcccagacggagatattggcatcgagggagtgttcggc
catatcggacccaaaggtaggaagggggattttgggtctgaggggccgataggtgtcgaa
ggggtcccgggtctagatggaggccgaggagagccgggccggccaggggaaaatggagtc
acgggagccaaaggttattctggaccaatgggggaccgtgggcctcctggatccatgaag
aacctgaactcgggcttcttgctggtgttgcacagccaatcaaatgcaattccatcctgt
ccagtagacatgagggttctgtgggtcggatacagtctgctgtacctggaaggtcaggag
aaagctcacactcaagacctgggtcaggcgggttcttgcatgcgggtcttctccaccatg
ccgttctcctcctgcaacatgggaacctgctcctatgctagtcgcaacgacaaatcctat
tggctgtccacaacggcggccatccccagcctgcctgtgggcggagcctccatcaaggag
cacatcagccgctgtatagtgtgcgaagccccctcctcacccgtcactctgcacagccag
accgcaaaccagccagactgcccccccgactggaggagcctgtggaccggatactctttc
ctaatgcacacgggagccggcgacgagggcggcggtcagtctctgacatcatcaggaagc
tgcctgacggacttccgggcccagcccttcgtggagtgtcagggccctcgaggaacctgc
cactacttcgccaacatctacagcttctggctgaccagggtggaggccaccgccccggcc
catgagcagggctcctccaccaccctgacgaacagctggcagcagagggagagcataggg
aggtgcagcgtctgcatgaggaagtaa
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