Gasterosteus aculeatus (three-spined stickleback): 120828357
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Entry
120828357 CDS
T07457
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03013
Nucleocytoplasmic transport
gat03015
mRNA surveillance pathway
gat03040
Spliceosome
gat05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120828357 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
120828357 (alyref)
03015 mRNA surveillance pathway
120828357 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120828357 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120828357 (alyref)
03041 Spliceosome [BR:
gat03041
]
120828357 (alyref)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120828357 (alyref)
TREX complex
120828357 (alyref)
Spliceosome [BR:
gat03041
]
Complex C
Other components
EJC/TREX
120828357 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120828357 (alyref)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_5
RRM_occluded
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
120828357
NCBI-ProteinID:
XP_040047827
UniProt:
A0AAQ4P8T4
LinkDB
All DBs
Position
11:complement(13615556..13618940)
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AA seq
268 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGGRGGRGRGRGASGGGRGGPGRLGVSGGGFGGRGGGTGP
MRSRSNLSRARGRPTPYNRPKQLPDKWQHDMFDNGFSGFSGPVGGGGGAGVETGGKLLVS
NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRTDAHKAMKQYNGIPL
DGRPMNIQLVTSQIDTQRRPMQGLNRGGGGAMNRGRGGGFRGMQRGRGGRGAAGGRGRGG
RGGASKQQLSAEELDAQLDAYNARMDTS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaatggatatgtctttagacgacattatcaagcagaacaggcagcagaga
ggtggaggccgaggcggaagaggccgaggccgcggagcctccggtggcggacgaggaggc
cctgggcgtcttggagtcagcggcggcggatttggaggccgaggcggcggaaccggcccc
atgaggagccggtcgaacctgagccgcgctagaggcagaccgacgccttacaataggccc
aaacagcttccagataagtggcagcatgacatgtttgacaacggcttcagcggattcagt
ggccctgttggaggcggcggaggagctggcgtggaaactggagggaagctcctcgtctcc
aatctggattttggggtgtccgatgcagacattcaggaactttttgcagagtttggaaca
ctgaaaaaagctgcagtacattacgaccgatcaggaagaagcctgggaaccgcagatgtc
cactttgaaaggcgaacagatgcccacaaggccatgaaacagtacaatggcatcccactt
gatggaaggccgatgaacatacagctagtcacatcgcagattgacacacagaggcgacct
atgcagggcctgaacagaggtggcggaggcgctatgaacagaggccgggggggtggcttc
agaggcatgcagagaggacgcggaggacgcggcgcggccggcggcagaggtcggggtggt
cgtggcggtgcaagcaaacagcagctgtcagcagaggaacttgatgctcagttagatgcc
tacaacgccaggatggacaccagctaa
DBGET
integrated database retrieval system
