Gasterosteus aculeatus (three-spined stickleback): 120828514
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Entry
120828514 CDS
T07457
Name
(RefSeq) protein Atg16l2-like
KO
K20868
autophagy-related protein 16-2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120828514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120828514
03029 Mitochondrial biogenesis [BR:
gat03029
]
120828514
Membrane trafficking [BR:
gat04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120828514
Others
Specific organelles associated proteins
Auto phagosome
120828514
Mitochondrial biogenesis [BR:
gat03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120828514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_ACSF4
NBCH_WD40
Beta-prop_VPS8
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_IFT122_1st
ATG16
Beta-prop_WDR75_1st
Beta-prop_HPS5
Ge1_WD40
Beta-prop_NOL10_N
Beta-prop_RIG_1st
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
120828514
NCBI-ProteinID:
XP_040048067
LinkDB
All DBs
Position
1:complement(298886..306195)
Genome browser
AA seq
607 aa
AA seq
DB search
MADSPRVPRHGGRDAAPALPRARSTEAWKRHIVGQLKHRDRSQHDRYQDLIPLLYDNRLL
EKTRLTKGILSGSPRRPADVSSDGRSVPSLRQQNEQLRKTSGELAYQVLELQQQTRTREL
LLEEQQYRLKEEELRLASAFDSRRVLQQRVEQVQLENAALKTKYDELLELRRREEAELRE
EKLRGDRLLETMIQERQQAAAHMNSRNQRRSRAREAHLQKELQSAMRSKVTVESCFSAPS
SRSTSPKCDLQLESRERGHSRLFRSLSASSPRILSSFRDLFHRRRRGHSVCSMEEDLVFP
VRVNLYARVPVRALQVLEAHEQGINAVRFSSSSHLLATGGTDREVKVWEVRSGSLTHRTT
LDGSTGGITCIEFDPMGFRILAASYDKSALLWRLDDSVAKLTLTGHRRKVTAARFSGCLH
QVVTGSEDRSIRLWDLQRAACVEVLEVSSSCSDLVCSENSVISGHFDSRIRVWDTRLLRC
VQELPAQGKVTSLDISSDHRHLLSCCRDDCLQLVDLRGRSNERVCFRAEGFKCGSDSSKA
VISPDGCFLAAGSADGAVYIWNVSTGNLETRLPDRHSSSISAVAWSLSGEYVVSVDKSRR
AVLWSDI
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcaccccgagtcccgcggcacggcggccgggacgcggcgcccgcgctgccc
cgggcccggtcgacggaggcctggaagagacacatcgtgggccagctgaagcaccgggac
cggagccagcacgaccggtaccaggacctgatcccgcttctgtacgacaatcggttgctg
gagaaaacccggctgaccaaaggaatcctgagcggctcccccagacgtcctgcagacgtc
tcctctgacggccgctccgtcccgtctctgcgtcagcagaacgagcagctgaggaagact
tcaggagagctggcctatcaggtgctggagctgcagcagcagaccaggaccagagaactt
cttctggaggagcagcagtacagactgaaggaggaggagctccggctggcaagtgcgttt
gattcccgcagggtgctgcagcagcgggtggagcaggttcagctggagaacgctgcgttg
aagacgaagtacgatgagttgctggagcttcggagacgagaggaggcggagctccgggag
gagaagctccgtggggatcgtcttctggagaccatgatccaggagagacagcaggccgcc
gcccacatgaacagccgcaaccaacgcaggtctagagctcgggaggctcacctgcagaag
gagctgcagtctgctatgaggtcaaaggtcaccgtggaaagttgtttcagcgctccgagc
tccagatcgacgtctcctaagtgtgacctccagctggagtccagagagcgaggtcacagc
agactgttcaggtccttgtctgcgtcctctcccaggatcctgtcctcctttagagacctc
ttccacaggagaaggcggggccactctgtatgcagcatggaggaggacctggtgtttcct
gtgagggtcaatctgtacgctcgagtccctgtgagggcgctgcaagtcctggaggcccat
gagcagggcattaacgccgtgaggttcagctccagctctcacctgctggcgacggggggg
acggaccgagaggtcaaagtgtgggaggtccgatcaggctcgctgactcacaggaccacc
ctggacggcagcaccggggggatcacctgcatcgagtttgaccccatgggcttcaggatc
ctcgcggcctcctacgataagtcggccttgttgtggcgtctggacgactctgttgccaag
ctgaccctgacgggtcacaggaggaaggtgacagccgcgaggttcagtggttgtcttcat
caggtggtgacgggcagcgaagacagaagcatcaggttgtgggacctgcagagagccgcc
tgtgtggaggtgctcgaggtgtcgtcttcctgcagcgatctggtttgttctgagaactcg
gtgatcagcggacactttgactccaggatcagagtgtgggacaccaggctgctgcgatgc
gtccaggagcttcctgctcaggggaaagtcacctcgctggacatcagctctgaccatcgt
catctgctcagctgttgccgtgacgactgcctccagctggtcgacttgagggggcgaagc
aacgagcgtgtgtgcttcagagccgagggatttaaatgtggcagcgacagcagcaaagct
gtgatcagtccggatggctgcttcctcgcggccggatcggcagacggtgctgtttacatc
tggaacgtatcaactggcaacctggagacccgcctccccgacagacacagttcttctatc
agcgccgtggcctggtcgctgtctggcgaatacgtcgtgagcgtggataaaagtaggcgg
gccgtcctctggagtgacatctga
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