Gasterosteus aculeatus (three-spined stickleback): 120828913
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Entry
120828913 CDS
T07457
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120828913 (col2a1a)
04518 Integrin signaling
120828913 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120828913 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120828913 (col2a1a)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120828913 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
120828913
NCBI-ProteinID:
XP_040048536
LinkDB
All DBs
Position
12:3622780..3641222
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AA seq
1487 aa
AA seq
DB search
MFGFVDSRTVLLLVASQAVLLSVVRCQDEDDQEAGGCIQDGQPYNNKAVWKAEPCRICLC
DSGAVLCDEIICDEFKECADPLIPSGECCPVCPADASDHIEAFGAKGQKGEPGEIADVVG
PMGPRGPMGPSGEQGVRGEAGAKGDKGNVGPRGRDGEPGTPGNPGPAGPPGPPGLGGNFA
AQMAGGFDEKAGGASMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGGPGETGEPGPAGAIG
PRGAPGPSGKPGSDGDAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ENGAAGAKGESGSSGENGAAGPMGPRGLPGERGRSGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGSEGAQGPRGEGGTPGSPGPSGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPIGPLG
ATGPSGEEGKRGPRGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGERGVPGAVG
PKGVVGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEAGKTGEKGLVGRPGLRGLAGKDGETGPSGPSGPAGPAGERGEQGQPG
PSGFQGLPGTPGVPGEAGKPGDQGVSGEGGAPGAVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGSDGPKGAIGPTGGAGSQGPPGLQGMPGERGTTGITGAKGDRGDNGQKGPEGAPG
KDGSRGLTGPIGPPGPSGPNGAKGETGITGPTGATGVRGAPGDRGEVGPPGPAGFAGPPG
SDGQPGAKGELGESGQKGEGGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGSPGPNGNPGSAGPAGPAGKDGPKGARGDAGLPGRQGDSGVRGPPGLQGEKGEAG
KEGLPGQDGPLGPQGLGGSRGIVGLPGQRGERGFAGLPGPSGEPGKQGAPGSSGDRGPPG
PVGPPGLTGPSGDTGREGTPGSDGPPGRDGATGVKGERGNTGPAGAPGAPGAPGSTGPVG
PLGKQGDRGESGAQGPAGPSGPSGARGMAGPQGPRGDKGESGEVGERGQKGHRGFTGLQG
LPGPPGSAGDSGAAGPPGPSGPKGPAGTPGPAGKDGSNGQLGPIGPPGPRGRSGESGPSG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADEASSSLRQHDVEVDSSLK
TLNSQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGNYWVDPNIGSTADAIKVFCNMESG
ETCVAPSIAEVPKKNWWTSKGKDRKHVWFGETMNGGFHFNYAEDGPVANAASVQLTFLRL
LSTEASQTLTYHCKNSVAYMDQATGNLKKALKLQGSNDVELRAEGTSRFTYTVLEDGCKR
HTDQWGKTVFEYRTQKTTRLPVVDIAPMDIGGADQEFGVEIGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcggctttgtggattcaaggactgttctgctactcgtagcttctcaagccgtctta
ctgtccgtggtcagatgtcaagatgaggacgaccaggaggcaggtggttgcatccaggac
ggccagccgtataataataaggctgtgtggaaggccgagccgtgtcgcatctgtttgtgc
gacagcggagcggtactgtgcgatgagataatctgcgacgagttcaaagaatgtgccgac
cctctcatcccgtctggagagtgctgtcccgtctgccccgctgacgccagtgaccacatt
gaggcctttggtgctaagggacagaaaggtgaaccaggagagattgccgatgttgtagga
ccaatgggaccacgaggcccaatgggcccctcaggtgagcagggagtgcgtggagaagct
ggcgcaaagggcgacaagggaaatgtggggcctcgaggaagagatggtgagcccggcacc
cctggaaacccgggacccgccggaccacctggaccgccaggactgggagggaactttgct
gctcagatggccggaggattcgatgagaaggcaggaggtgctagcatgggagtgatgcag
gggccgatgggtcccatgggtcctcgtggcccccctggacccagtggagcccctggccca
caaggtttccaaggtggacctggagagacaggagaacccggtcccgctggagcaattgga
cctcgtggagcacctggaccttctggaaaacctggaagtgatggtgacgctggcaaacct
ggaaaagctggtgagcgtggacccgcagggcctcagggagctcgtggattcccaggaact
cctggacttcctggaatcaaaggacacagaggtcaccctggtctggatggagctaaggga
gagaatggtgccgcaggagccaagggtgagtctggttcctctggagagaacggagcggcc
gggcccatgggtccacgtggtctgcccggcgagaggggacgttctggagctgccggagct
gcaggtgcccgtggaaatgacggcttgcccggtcccgctggtccccctgggcctgttggt
cctgctggtgctcccggtttcccaggatctccaggatccaagggagaagctggtcctact
ggagcccgtggatctgaaggagcacagggtcctcgcggagagggcggtaccccaggatcc
cctggaccctccggagcatcgggtaaccctggtactgatggtattcctggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccgggccccgtggcccacct
ggaccacaaggagccacaggacctctggggccaaagggacagtctggagaccctggtctt
cctggattcaaaggtgaagccggacccaagggagaactaggccctatcggtcctctcggt
gccactgggccttctggtgaagaaggaaagcgaggccccagaggagagcctggaacagcc
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gacggtcttgctggtgcaaagggtgcccctggtgaacgtggtgttcctggtgctgtcggg
cccaagggtgttgttggagatcccggacgcacaggagagtccggcctccccggagccaga
ggtctcacaggtcgtcccggagatgctggtcctcaaggaaaagttggaccttctggggct
tctggtgaggacggtcgccccggcccgcccggccctcagggagcccgtggccagccagga
gtgatgggattccccggaccaaagggagccaatggtgaagctggaaagacaggagagaaa
ggtcttgtgggtcgtccaggtttgagaggtcttgctggaaaagatggtgaaactggtcct
tctggacccagtggccctgctgggcctgctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctgcccggaacacctggtgtcccaggagaggccggaaagccc
ggtgaccagggagtttctggtgagggaggagctcctggtgctgttggacccagaggtgag
cgtggtttcccgggtgagaggggtggtgctggacctcagggcctccagggacctcgtgga
cttcctggaacaccaggatctgatggacccaagggagccattggacctactggcggtgct
ggatcccagggcccccccggcctgcagggtatgcccggagagagaggaacgactgggatc
acaggagccaagggagacagaggggacaatggacagaaaggacccgagggagctcccgga
aaggacggtagtagaggtttgactggtcccatcggtcctcccggcccatctggacccaac
ggagccaagggtgaaactggaatcactggccccactggtgccactggtgtccgaggtgct
cctggtgaccgtggtgaggtcggacctcctggccctgccggctttgctggacctcctggt
tcagatggtcagcccggtgctaagggagagcttggtgagtctggacagaagggagaaggt
ggttctcccggacctcagggaccatctggggcccctggacctgtgggacctactggtgta
tctggacctaaaggagcacgtggtgctcagggtgctcctggtgctactggtttccctggc
gccgctggcagagttggatctcctggtcctaatggtaaccctggttctgccggccccgct
ggcccagccggtaaagacggaccaaaaggtgctcgtggtgatgccggcctcccgggaaga
cagggagacagcggtgtccgcggacctcctggccttcaaggagagaagggagaggctgga
aaggagggactacctggtcaagacgggcctttaggtcctcagggtctgggtggatctcgt
ggtattgttggtctgcccggtcagcgtggagagagaggtttcgctggtctccctggacct
tctggagagcctggtaaacaaggagctcctggctcttctggcgaccgcggacctcctgga
cctgttggaccccctggacttactgggccttctggagacactggcagggagggtaccccc
ggatcagatggacctcctggtagagacggagctactggagtcaagggagagcgaggtaac
accggccccgccggcgcccccggagctcctggtgctcccggctccactggacccgtcggc
ccactcggcaagcagggagacagaggagagagcggcgctcaaggacctgccgggccctct
ggacccagcggcgcaagagggatggctggaccccaaggaccacgtggggacaagggagag
agtggtgaggtcggagagagggggcagaagggtcaccgcggcttcaccggtctgcagggt
cttcctggacctcctggttccgctggagattctggagctgctggacctcccggaccaagc
ggacctaagggaccagctggaacacccggacctgctggcaaagacggatcaaacggacag
ctcggccccattggaccccccggacctcgtggacgttctggcgaaagtggtccttctggt
cctcctggtaacgccggacctcctggcccacctggtcctcctggcccaggcatcgacatg
tcggccttcgctggtctgggtcagatcgagaagtcccccgatcctctcaggtacatgagg
gccgatgaggcctccagctccctgaggcagcacgacgtggaggtggattcctcgctgaag
acactcaacagccagatagagaacctgcgcagccccgacggctcccagaagaaccccgct
cgcacctgcagggacctgaagctgtgccaccccgagtggaagagcggtaactactgggtc
gatcccaacatcggcagcacagccgacgccatcaaggtcttctgcaacatggagagcgga
gagacctgcgtcgccccgagcatcgccgaggtgccgaagaagaactggtggacgagcaag
ggcaaggaccgcaaacacgtctggttcggagagaccatgaacggaggattccacttcaac
tacgccgaggacggccccgtcgccaacgccgccagcgtccagctgaccttcctgaggctt
ctgtccaccgaggcgtcccagaccctcacttaccactgcaagaacagcgtcgcctacatg
gaccaggctacgggcaacctgaagaaggccctgaagctgcagggctccaacgacgtggag
ctccgcgccgagggcaccagccgcttcacgtacaccgtgttggaggacggctgcaagaga
catacggaccagtggggcaagaccgtctttgagtacagaacacagaagaccacccgtctg
ccagtcgtggacattgctcccatggacatcggaggagcggatcaggagttcggagtcgaa
ataggagcggtctgcttcttgtaa
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integrated database retrieval system
