Gasterosteus aculeatus (three-spined stickleback): 120829012
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Entry
120829012 CDS
T07457
Name
(RefSeq) collagen alpha-1(XX) chain isoform X1
KO
K24357
collagen type XX alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
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Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
SPOR
Motif
Other DBs
NCBI-GeneID:
120829012
NCBI-ProteinID:
XP_040048668
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All DBs
Position
XII:complement(17200605..17227370)
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AA seq
1588 aa
AA seq
DB search
MSPQLLASASFSFWLMVCLLLGVVLLLSTGVHGQGRLKLTVLSEDRLQMKWKEADGPVQG
YKVRVRPISEVPQPELMLTTTRGRATVAGLDSSQEYALQVLVLNGTTEKLLAKRRFTMEG
LREEEAIRSGSRDQKKKMLPGGSGSGDLDEATEALTGLPTILYPDPATTISTSTTAAPTE
PPVPETPSQPPDEAQEKTTKEKRKRKKEKERDRSKGEEKEEQGTTQGKAPEERPRKAPFP
TQPVTGTSPRKPFECDSVAAADIVLLVDGSWSIGRANFRRVRDFLEGLMMPFHIGPDHIQ
IGLTQYSGDPRTEWQLNSFTTKDQLLEAVRNFRYKGGNTFTGQALLHVMENNMRAEAGAR
SGAPVFLVLLTDGKSQDDAIAAANRLKSAGVEIIAVGVKNADEAELRQVASEPVDLNVYN
VNDFPLLIKLVGRLVHILCGRIEDRGISKRMEPGPTADPYLSHPGPTDLRFSELGSREVQ
LHWTNPTKPVRQHRVVYHSAEGQTPQEVVLAGSESTVLLQGLSSQTLYHVSIFPVYEDTV
GLALRGTVTTLPLAIPTDLEVTPSSFSTLRVSWGSAPGATQYMILYSALNHGEPDDAKEE
KFSAEQTGGVELAGLLPATDYSVTLYALYDEDPSDPVTAVATTLHVPPPVSVQFPMVTHS
MLRVSWVPGAVDVPGHRITYSTNHGSDVKQVEVAGLNSVVVQNLSSLSRYLVSVQSHYPL
GLSAALTSNVTTLKVPSPSDFRVSNFSGSDITVRWESAADDVVSYLIKWISLSGGDLRQL
RTGGESEGAILEGVEDDKEYQISLSALYGDGAQSEAVATRYSTLSGGGPSRILVTEETAV
SLVVSWVPPNAHVLQYRVSYTALTAAETQDSTVVVPGAEKRVTLESLQPDTRYSILVTAE
YRNREGGSGSAQGKTASLRVSSVSVVRSDHSSICVSWRPVSAVDGYRIVIQSVKDKQAKE
EAVDESSSSQCFTDLEPETLYRISVHSLLGSAEGAAVSILHPTATAPARIPIHPRMYPVH
NEVCPEVTIRNSFVKGFDMMEAFGLTETAHSSVEGVAAEPFAFNDLPTYTLYRDVQLTQS
TRFIHPAGFSPEHTISIGFRVLQETPREPFALWQLTDNDFQPKMGVVLDPTTKHLVYFSL
DYRGEVQELTFDQQQVHRLFYGSFHKVHLSVSQVSVSLSVDCQRVGERPARPLGSLPTDG
FEMLGKLVKTRGPNSGSAPFQLQSFEIVCNTSWASEDTCCDLPGVRDEESCPVPAYTCTC
SSDVPGAPGSPGPIGKPGPRGEKGVKGEPGQKGEVGPAGKPGFEGGLGPLGSTGPRGMAV
QGKAGPPGARGEKGDPGRPGVQGLPGPPGAAGEVGIPGPQGIRGLEGNIGGPGLTGPRGF
QGMPGHPGPLGDRGFSGPAGPTGLPGAKGERGEKGEPQSMAMIYQLVTQACEQLVHKEVL
KLDLFINEMSRKPAPIEEPVGPPGEPGIPGPRGPPGPRGTQGRVGLRGTTGRGGYPGEQG
RRGLPGGKGDAGPNVQGPIGVKGFAGPPGESKLGSLGPKGADGKAGAPGTAGPPGQPGEG
GPPGVCDSSGGCQRVPPQTEDPYYGYQP
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctcagctccttgcttcagcatcattctctttctggctgatggtgtgtttgctg
ctcggtgtcgtcctgctgctgtccacaggagtccatggccaaggtcgtcttaagctgacg
gtcctgtctgaggacagactgcagatgaaatggaaggaggctgacggacccgttcagggc
tacaaggtcagagtgagacccatctcagaggtgccgcagcccgagctgatgctgaccacc
acacggggccgggcgacggtggcgggactggactcgagtcaggagtacgcgctccaagtc
ctcgtgctcaatgggacgacagagaaactcctcgcaaagcggagattcaccatggagggt
ctacgggaggaggaagcgatccgcagtggtagtcgagatcagaagaagaagatgttgcca
ggcggttcggggtcaggagacctggacgaggcaacggaggctctgactggcttgccgaca
attctgtatccagaccccgccaccaccatcagcaccagcaccaccgcagcccctacagag
cccccggtcccagaaaccccctcccagccccccgacgaggcccaggagaaaaccaccaaa
gagaagaggaagcgtaagaaggagaaagagcgggatcgttctaagggggaggagaaggag
gagcaggggacgacgcagggcaaagccccagaggagagaccccggaaggcccccttccct
acccagccggtgacaggtacgtctccaaggaaaccgtttgagtgtgacagcgtggcagcg
gccgacatcgtgttgttggtggacggctcctggagcatcgggcgcgccaacttcagacgg
gtccgagacttcttggagggcctgatgatgcccttccacatcgggccggaccacattcag
atcggtctgacccagtacagcggagacccccgcactgagtggcagctcaacagcttcaca
actaaagaccagctgttggaggcagtgaggaatttcagatataaaggaggaaacactttt
acaggccaggcgctgctccatgtcatggagaacaacatgagggccgaggcgggcgccagg
tcaggcgcgcccgttttcctggtcttgttgaccgacgggaaatctcaggatgacgccatt
gctgcggcgaaccggctaaagagcgccggcgtggagatcatcgccgtgggcgtaaagaat
gccgacgaggccgagctgagacaagtggcatcggagccggtggatctgaacgtctacaat
gtcaacgacttcccgctgctcatcaaactggtgggccggctagttcacatcctgtgtggg
aggatagaggaccgtggcatctcaaaacgaatggagcccgggcccacggctgacccgtac
ctctcccaccccggtcccaccgacctccgcttctctgaactgggctccagagaagtccag
cttcactggaccaatcccaccaagccagtgcggcagcaccgagtggtctaccacagcgcc
gagggtcagactccacaggaggtggtgttggccggctcagagtccactgtgctgctgcaa
ggcctctcctctcagacgctgtaccacgtgtccatcttccccgtgtatgaagacactgtt
ggcctggcgctcagaggaactgtcaccacactgcccctcgccatccccaccgacctggag
gtgaccccttcctccttcagcacgctgagggtgagttggggctcagcgcccggtgcaaca
cagtacatgatcctgtactcggccctcaaccacggggagccggatgacgccaaggaggag
aagttcagtgcagaacagacgggaggggtggagctggcagggttactgccggcgaccgac
tactccgtcaccctctatgctctgtatgacgaggaccccagcgaccccgtcactgctgtg
gccaccacattacacgtcccaccaccagtgagcgttcagttcccgatggtcacgcacagt
atgctgagggtgagctgggtgcccggagctgtggatgtccccggccacagaatcacctac
agcaccaaccacggcagcgacgtcaagcaggtggaggtagctggactgaactcagtggtg
gtgcagaacctctcgtcactctccagatatctggtatcagtccagtctcactaccctctg
ggcctgtcggcagcactcaccagtaacgtcaccacactgaaggtgccttccccatcagac
ttcagggtgtccaatttctcgggcagtgacatcaccgtgcgctgggagtctgcagccgat
gacgtcgtctcttacctcatcaagtggatctccctaagcggaggagacctgagacagctg
aggacgggaggcgagagcgaaggggcgatcctggagggtgtggaggacgataaggaatac
cagatctctttgtctgcactttatggcgatggagctcagagcgaagctgtggccacacgc
tacagcaccttgtctggcgggggcccatccagaatattggttaccgaggagacggccgtc
agcttggtggtcagctgggttcctccgaacgctcacgtgctccagtaccgcgtgtcctac
actgcgctgactgcagccgagacccaggacagcaccgtcgtggtcccgggtgctgagaag
cgggtgacgctggagtcgttacagccagatactcggtacagcatcctggtgaccgctgag
taccgcaacagagagggaggcagtggttctgctcagggaaaaaccgcaagtctgcgggtg
agcagtgtgagtgtggtccggtcagaccactccagtatctgtgtgtcttggaggcccgtg
tctgctgtcgatggatatcgtatcgtcatccagtcagtcaaagacaagcaagcaaaggaa
gaggcggtggatgagtccagcagcagtcagtgcttcactgatctggaaccagagactctg
tatcgcatcagcgtgcactctcttctgggctcagcagagggcgccgccgtctccattctc
catccaacagccacagctcccgcaagaatccccatccacccccggatgtaccccgtccac
aacgaagtctgccccgaagtcaccatcagaaacagctttgtcaaaggatttgacatgatg
gaagccttcggcctgaccgagacggcccactcgtctgtggagggcgtcgcggccgagccc
ttcgcgttcaacgacctccccacgtacactctgtacagagacgtccagctgacacagagc
accaggttcatccaccctgcaggtttctcgcctgaacacaccatcagcatcggcttccgc
gtgctgcaggagactccccgggagcccttcgccctctggcagctcaccgacaacgacttc
cagcccaagatgggagtggtgctcgacccgaccaccaaacacctggtgtacttcagtctg
gactacaggggagaagtgcaggaactgacctttgaccagcagcaggttcaccggctgttc
tatggcagtttccacaaggtgcacctgtcggtcagccaggtgagtgtgtccttgtccgtg
gactgccagcgcgtgggggagaggcctgcccgccctctaggcagcctgcccaccgacggc
tttgagatgctgggaaaactggtgaagaccagaggacccaatagtggatccgcaccgttc
cagctgcagtcctttgagatcgtctgcaacacgtcgtgggcttcagaggacacctgctgt
gacctgccaggggtgagagatgaggagagctgccccgtcccggcctacacctgcacctgc
tcctccgacgtccccggagcccccggctcccctggacccatcgggaagccaggtcctcgg
ggtgagaaaggcgtgaagggagagccgggacaaaagggggaggtgggtcctgcaggaaag
cctggctttgaaggaggtcttggacccctgggcagcacggggccccggggcatggccgtg
cagggtaaagcgggtccgcctggtgcacgaggggaaaagggagatcccgggcgaccaggg
gttcagggtttaccaggacctccgggtgcagcaggagaggtggggattccaggccctcag
ggcattcgggggcttgaaggaaacatcggtggaccaggcctcactggcccccggggtttc
cagggaatgcccggacacccggggcctttaggggacagaggcttctcaggaccggcggga
cctacgggtttgcctggagctaaaggggagcgaggagagaagggggagcctcagtccatg
gccatgatctaccaactggtcacacaggcctgtgagcaactggtgcataaggaggtgttg
aaacttgacttgttcattaacgagatgagtcgaaagcctgctcccatagaggagcctgtg
gggccccccggggaacctggtattccagggccgaggggcccaccgggccccagaggcacc
caggggcgtgtcggcctgagggggaccactggcaggggtggatatcctggagaacaggga
agaagaggtttgcccgggggcaaaggggacgcagggcccaatgtccaggggcccataggg
gtcaaaggatttgcaggtcctccaggggagtccaagctgggcagcttaggtcccaaagga
gcagatggtaaagcaggcgccccagggaccgccggaccccctggacagccgggcgagggc
ggaccaccgggtgtgtgcgacagcagtggaggctgccaacgggttcccccgcaaacagaa
gacccgtattatggctaccagccctga
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