Gasterosteus aculeatus (three-spined stickleback): 120829227
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Entry
120829227 CDS
T07457
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04140
Autophagy - animal
gat04148
Efferocytosis
gat05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120829227 (vps16)
04148 Efferocytosis
120829227 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120829227 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120829227 (vps16)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120829227 (vps16)
Hops complex
120829227 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
120829227
NCBI-ProteinID:
XP_040049127
UniProt:
G3PRQ7
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Position
I:complement(29361419..29371354)
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AA seq
832 aa
AA seq
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MTFITANWNPLGEAFYRKSELYEMCWNLRDGLRDCLVAAAPYGGPIALLREPVRRSPSSR
PQLEIYSASGVSIASFPWKSGPVVHLGWTVSDELLCIQEDGSVLIYDLFGSFKRHFSMGQ
EVVQSQVLEAKVFHSPYGTGVAIVTGSSRFIMATNIDDLKLRRLPEVPGLQGKPSCWVVL
NQDRQTKVLLSTGSELYILDNTSCTAVSLPGLAPQGGSIVHMSVSFSYKYLAVLTDSGHL
WTGPSHLQDKMSEVDTKKLTPPKQMVWCRRPKSQQPSVVLMWDRLLMVVGVCQDTIQFPT
EDQCVLVGEMDGVRIISSTNQELLQEVPLVCQEIFKIASMAPGALLLEAHREYEKSSQKA
DEYLREIKEQSMLGEAVSQCIEAAGHEYDPNTQKSLMRAASFGKCFLTDFSPGQFVTTCR
ELRVLNSVRESSVGLPLTHTQFKQMTLQVLIDRLVYRQFYPLAIEMCRYLKIPDYQGVSR
VLKHWASCKVQQKDLSDEAIARAMCAKVGDSPGVSYSDIAAKAYECGRTELAIKLLDFEA
RSGEQVPLLLKMKRSQLALSKAVESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKLQEQETLKDLYNQDDDHKELANYYVTASYREKRLESRLSLLQSAVDEYNKAKNE
FSAKATEEEMRLLRFQRKLDDEKGAGLLELSLQATMEALLALGLYKQAEQLYRDFRVPDK
RYWWLKLKSLAEKEEWDELEKFSKSKKSPIGYLAFVEVCMKSNNKYEAKKYVSKVTPEQR
VKAHLAISDLDGAADAAIERKNDSEIATVLSRCSAADRLLIERLNRASTAKK
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttatcacagccaactggaacccgctgggggaagctttctatcggaagagtgag
ctgtatgagatgtgttggaacctaagagacggactccgagactgtctggtggctgcagct
ccatatggaggtccaatagctctcctcagagaacctgtcagacggtctcctagttctcgt
cctcagcttgagatttattctgcatctggagtatccattgccagcttcccgtggaagagt
ggtccggtggtccacttgggttggacggtgagtgatgagctgttgtgtattcaggaggac
ggatcggttctgatctacgatctgtttgggtctttcaagagacacttcagtatgggacag
gaagtggtccagagtcaggttctggaagccaaagtgttccactctccgtatggaacaggg
gttgccatagtaacaggctcatcacgcttcatcatggcaaccaacattgatgacctaaag
ctcagaaggttacctgaagtccctggtctacaagggaaaccctcctgctgggtcgtcctc
aaccaggacagacagactaaagtcctcctgtccactggatctgaactgtacatcctggac
aacacgtcctgtactgcggtgagtcttccaggtcttgctcctcagggcggcagtattgtc
cacatgtctgtgtctttcagctataaatacctggctgtcttaactgactctggtcacctg
tggacaggcccctcccatcttcaggacaaaatgagtgaagttgacactaaaaagttgaca
cctcccaaacagatggtctggtgtcgcagaccaaagagtcagcagccgtctgtggtgttg
atgtgggacagactgctcatggtggtcggagtctgtcaggacacaatccaattcccaaca
gaggaccagtgtgttttggtcggagaaatggacggagttcgcattatcagctcgaccaat
caggagctgctgcaggaggttcctctggtgtgtcaggaaatcttcaaaatcgcttccatg
gctcccggtgctcttctgctggaggcccacagggagtacgagaagtcgagtcagaaggct
gatgagtacctgagagagatcaaagagcaaagcatgcttggagaagcggtttcccaatgc
atcgaggcagcaggacacgaatacgacccaaatacgcagaaatccctgatgagggccgca
tccttcggtaaatgtttcctgacggacttcagtcctggtcagttcgtgacgacctgcaga
gaactcagagtgctgaattccgtgagggagagcagcgtggggctgcccctcactcacact
caatttaaacagatgactctccaggtgttgattgataggttggtgtatcgacagttttat
ccattagcgatagaaatgtgtcgttacctgaagattccagattatcagggagtcagcaga
gtccttaaacactgggcttcatgcaaggtgcagcagaaggacctatccgatgaggccata
gcccgagcgatgtgcgctaaggtgggagactcacctggtgtttcttattcggacatcgca
gccaaagcttacgaatgtggacgcactgagctcgccatcaagttgttggactttgaagcc
cggtctggagagcaggttcctctgctgttaaagatgaagaggagtcagttggctctgagt
aaagccgtggagagcggcgacactgacctagtttacacggtggtgacgtacctaaagaac
gagatgaacaggggagacttcttcatgacactaaggaatcaaccagtggctttaagcctc
tacagacagttctgtaaactgcaggaacaagaaactctgaaggacctttataaccaggac
gatgaccacaaggaacttgccaactactacgttactgccagctacagagaaaagaggtta
gagagccgtctgtctctgctgcagagtgctgtggatgaatacaacaaagccaagaatgag
ttctctgcaaaggccacagaggaagaaatgcgtctcctacgtttccaacgcaaactcgat
gatgagaaaggggcggggctactggaactctctctacaggctaccatggaggctctgttg
gctttaggactctacaaacaagcagagcaactgtacagggacttcagagtacctgacaaa
aggtattggtggttaaaactcaagtccctggcagagaaggaggagtgggatgagctggag
aagttctcaaagagcaagaagtcccctattggctacctggcgtttgtcgaagtttgcatg
aagagtaacaacaagtacgaagccaagaagtatgtttccaaggtaacacctgagcagagg
gtcaaagctcacctagcaatcagtgatcttgacggagcagcagacgccgccattgagagg
aagaatgactctgagattgcgacggtcctctcgagatgctccgccgccgaccgtctgttg
attgaaaggttgaaccgagcctccactgccaaaaagtga
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