Gasterosteus aculeatus (three-spined stickleback): 120829287
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Entry
120829287 CDS
T07457
Symbol
prdm2a
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat00310
Lysine degradation
gat01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
120829287 (prdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120829287 (prdm2a)
03036 Chromosome and associated proteins [BR:
gat03036
]
120829287 (prdm2a)
Enzymes [BR:
gat01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
120829287 (prdm2a)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120829287 (prdm2a)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
120829287 (prdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2HE
zf-C2H2_6
zf-C2H2_8
zf-C2H2_ZNF462_1st
Zn_Ribbon_YjdM
zf-C2H2_jaz
zf-C2H2_3rep
Motif
Other DBs
NCBI-GeneID:
120829287
NCBI-ProteinID:
XP_040049202
LinkDB
All DBs
Position
XII:12394862..12403014
Genome browser
AA seq
1386 aa
AA seq
DB search
MEDSPHLYISEIGTNEDLDEGEEEEEEEDEENEDDINQEETNMQPDMVKAPFPDIHKHAD
QDTERGRNSFPCLHCEGQFTSKQGLEQHTHTHALENHEAPAYKSHESNMSQSQQEKTKLP
DSGGSVVQFHSSSPATSNTSVVSPGDLGALPDRPGVLEGRHACKYCEKMFTTQTKKRRHE
RRMHEQHLQVTREEKSQLAQEENLQKMLPEPSQQETEVGDNSEPAAVLENDVVCTEHYML
DVSSNISENLSFYIDGKIVSTSTVSSCEASEIPSGSSSLVGLDALILHTAQISQVLNADS
VASKDIPGQPQVRRRTATPPLLPQIRTELESEGAAPSSSSSLVSSLIENLLPQNTGATVG
QKERTVFLSPKLKQLLEKQDGLKPTLALIADAQKPCSPVSLSVLAAGTGRFKRRTGSPPS
SPQQSPTSKDETADGGGGDAVSTGQVETQPVQQTATVKDDPTQTPSEEPAVKPVSTESWP
PAAGGNSCNQQPLDLSNTVKRNEELTLAEAVLDLSLQKSTLVKSEVTLDLVSRAVLKAGN
FDACMAETALINVGEQNVSLGNPLVTDFTILTGPDVMTPMESMAEGLVYGLALPSGSLTP
STASLTPVALQPASPCTIAFASPVSHTVLPTASSLITVLAPSNISNAPIQPIQLLAPDMS
PEPLVICTENAFNFSECDLATAFATTDSTEPVALSQSLDPTLNLRGNVFLCDQIALNQPL
VESNPMSEQSFTPTASINDSLISSYNITSNTVLIECNIALEAPGRVVPAAESLAPMVVNQ
MEQQEIVSAPNPQTLGPSMLMSSIAESVTLSATDASGISDCPAVGESSLDPELVVNAKPP
SVKEEEAADGTVSLPEISSSNTSTSLEQASEDESSDSTLSDAQEQNFTKNFICNVCDRLF
HSMKELGHHVGDHADEWPYKCEFCVLLFSKPSALLDHRSSLHGVGRSYVCSACTKEFVYL
CNLKQHQDELHPGQQCTYTEEEKGKLRPQNYNNSIKDRTDAAEEPEKLVKKEENVVDVAA
DELLTTIKILASDGAKVKGPDVRLGINQHYPSFKPPPFPYHNRSPAGSVASATNFTTHNI
PQTFSTAIRCTKCGKSFDNMPELHKHILACANASDKRRYTPKRNPIPLRHFAKTQNGVLS
TTNTTNGLNASNRPNRSKPSQDSPVKVKFKVLKKRKKKLAQRVMPQRNKSAPSSNKMSPA
RVDEPQEVFVCPHCSREFTMRRSRTKHMAVCPKKPKEGKKRKDGGISVTKENDGHQRRRV
EEKQQSSPRHKTRLQSSASSGPAKRPAILPVQAVFSSKRSKIIIKESTQPKPETPALNEP
PVVRTFNPSMRQYTRVQHGVKGLPIKITIVKQQQAAPQKDELLPTQSRAQFVSRAATGSS
EPTPTT
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggaggactctcctcacttatacatctctgaaattggcaccaatgaagatctggatgaa
ggtgaggaggaggaggaagaggaggacgaggagaacgaagatgacattaatcaagaggaa
actaacatgcagccagacatggttaaggcaccgttccctgatattcacaaacacgccgat
caggatactgaaagaggcaggaactcttttccctgcctgcactgtgagggacaatttacc
agcaaacagggcttagaacaacacacgcacactcatgctttggagaaccacgaggcaccc
gcatacaaaagccatgagagcaacatgtctcagtcgcagcaggagaagacaaagcttccg
gattcaggaggctcagtcgtgcagtttcattcttcatcccccgctacctctaatacttcc
gttgtgtcgcccggtgacctcggcgctctgccagacagaccgggagtattagaagggcgt
catgcttgtaagtactgtgaaaagatgttcactacacagaccaaaaagagacgccatgag
cgcaggatgcacgagcagcacctgcaggtcacacgtgaagaaaaaagccagctggcccaa
gaggaaaatcttcagaaaatgctccctgaaccttctcaacaggaaacggaggtcggggat
aatagcgaacctgctgctgttctggagaatgacgtggtgtgcacagaacattacatgcta
gatgtttctagcaatatctcagagaatctcagcttctatatcgatggtaagatagtgtca
acaagtacagtcagtagctgtgaagcatccgagattccttctggttcttcatccctagtt
ggactggatgccctgattctacacacggcccaaatcagccaggttttaaatgcagattca
gttgcaagcaaagacatacctggtcaaccgcaggttaggagaagaactgcaaccccacct
cttttacctcaaattagaactgaactggagtctgagggggcggcgccttcttcgtcatcc
tcactcgtgtcttctttaatagagaatctactccctcagaataccggggccacggttggg
cagaaggagagaactgtgttcctgtctccgaagctaaagcagctcctagagaaacaggat
ggccttaaacctacacttgccctcatagcggacgcccagaagccttgttcccccgtctcc
ctgtctgttctggcggctggaacgggaaggttcaagagaaggactggctctccaccgagc
tctcctcagcaaagcccaacatccaaagacgaaacggcagatggtggaggtggtgatgca
gtgagcacagggcaggtagagactcaacctgtgcagcaaacagccactgtgaaagatgac
ccaacgcaaacgccatcggaggagccggccgtgaagcccgtctcgacagagagttggccc
cccgcggccggcggtaattcctgtaaccagcaaccgctggatctctccaatacggtcaaa
agaaacgaagagttaaccctagctgaggcagtgctggatttgagcttacaaaagagcacc
ctagttaaatctgaagtgacattggatttagtttcacgggcagttttgaaagcagggaac
tttgatgcatgcatggcggagacggccttaataaatgttggtgagcaaaatgtaagccta
gggaatcctttagtcacagacttcacaatacttacaggtccagatgtgatgaccccaatg
gagtccatggctgagggactcgtttacgggctcgcacttccatccggttctctgactcca
tcaacagcatcccttacccctgttgccttgcaaccagcttcaccctgtaccatagcattc
gcttcccccgtatcacacactgtgctacctactgcttcttcattaataacagttttggca
ccatcgaacatttcaaacgctccaatccaaccaatccagttactagcccctgatatgtct
cccgagcccctggtcatctgcacggaaaatgcattcaacttttcagagtgtgatttagct
acagcatttgctactacagattccacagagcctgtagctctctcccagtccctcgaccca
actctaaatctacgtgggaacgtttttctctgtgatcaaatagctctcaaccagcctttg
gttgagtccaatcctatgtcagaacagtcattcacgcccacagcatctataaatgactcc
ctcattagttcgtataatataaccagcaacaccgtgttgatagagtgcaacatagccctc
gaagccccggggagagtggttccggctgctgagtctctagcaccgatggtcgtcaatcag
atggaacagcaagagattgtatcggcgcccaaccctcaaactctgggcccctctatgctg
atgtcctccattgcagaatcggtaactctatccgccactgacgcctcagggatatctgat
tgtcctgctgtgggggaatcaagtctcgacccagagcttgttgttaatgcgaagccccca
tcagtgaaagaggaggaagcggctgacggcaccgtttccctccccgaaatctcctcctcc
aacacttcaacttctctggaacaagcttcagaggacgagtcctcagacagcacgctgagc
gacgctcaagagcagaatttcaccaagaatttcatctgcaacgtctgcgatcggcttttc
cattcaatgaaagaactgggccatcatgtgggagaccatgctgatgaatggccctacaaa
tgtgagttctgcgtgctgctcttcagcaaaccctccgctttgctcgatcatcgatcgagc
ctccacggtgtcggcaggagttatgtttgcagtgcgtgcacaaaggaatttgtctatctc
tgtaatctgaaacagcatcaggatgaattacatcccggacagcagtgtacctacacagaa
gaagaaaagggtaaactaagacctcagaactacaataactcaataaaagaccgcacggat
gctgcggaggaacccgagaaactggtgaaaaaggaggaaaatgtagtggacgtggctgca
gacgaactgcttacaacaataaaaatcctggcatcggacggagccaaagtcaaggggccc
gatgtccgtcttggcattaaccaacactatcccagctttaagccccctccgtttccatac
cataacagatcacccgctggctctgtggcttcggccacgaacttcaccacccacaacatc
ccgcagacctttagcacggctatccgatgcacaaagtgtgggaagagcttcgacaacatg
ccagagttgcacaagcacatcctggcttgtgcaaatgccagtgataaaaggagatacacg
cccaaaaggaatcccatccctctgcgccactttgcaaaaactcaaaatggagttttgtcc
actactaacaccaccaacggactaaacgcttccaacagacccaaccggtccaaacccagc
caagactcaccagttaaagtcaagttcaaggtgctgaagaaaaggaagaagaaattggcc
caaagggtcatgccgcagcggaacaaatctgccccttcgtccaataagatgtcccctgca
cgtgtggacgagccacaggaggtctttgtctgcccgcactgcagcagggagttcacaatg
cgccgcagccggaccaaacacatggccgtctgccccaagaagccgaaagaggggaagaag
aggaaggacgggggaatttctgtgacaaaggaaaacgatggacaccagcgtagaagggtg
gaagagaagcaacaatcctcgcctcgtcacaaaacaagactgcagagttcagccagttcg
gggcctgccaaaagacccgccatcctgcccgtgcaggccgtcttttcgagcaaaagaagt
aaaataatcataaaggagagcacgcaaccaaaaccagagacgcccgcgctgaatgaaccc
cccgtggttcgcactttcaacccctcaatgcggcagtacaccagagtgcagcacggcgtc
aaagggctccccattaaaatcaccatagtgaagcagcaacaggcggcgccacagaaggat
gagctgcttcccacccagagccgagcgcaattcgtcagcagagccgccaccggcagctct
gagccaactcccaccacctga
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