Gasterosteus aculeatus (three-spined stickleback): 120829427
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Entry
120829427 CDS
T07457
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
120829427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120829427
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120829427
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120829427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
zf-RING_5
RING_XB3-XBAT31
U-box
zf-RING_10
zf-RING_4
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
120829427
NCBI-ProteinID:
XP_040049439
LinkDB
All DBs
Position
XII:complement(16300608..16304279)
Genome browser
AA seq
504 aa
AA seq
DB search
MSLSKPEELLAHELSCPICLQLFSDPVVLPCGHNYCLACIRMTADSTDDAPPRCPECRDE
YQGVETLKRNFKLCSIIEGYRAAAAAAETRADEPDSAAEAPCSGRETEWDAKSCATHRRP
IEYFCSDDMSLMCGVCFSEGRHCNHDVLTLEAAEEEMRRALENRSTLVSQRLHMTESLLQ
VTAKEQGAAEAIGNKLANKAVTVMESMAALVDGYRDCLRLLLEEEKNMRRKSWQVGLDAL
EVQQQQLVQAQQRATQALSETDTCTFMQRFMQIEPKLREVATGAFPSGVPSKAPLNPKRL
QAGLKTQDFRSEMTRHLDSLHILLNPLELTFNLCTAHPNLLVSSDQRTVKYSPVKQTYPD
HSERFTSAPQILCTQGFSGGEHVWVVEVGGSSMWSMGVCYKSIPRRGDHSRLGHNSVSWR
LQWKNGKLTVCQSSCNVALGEMSHHPLRVEVALDYEAGTLMFHNVRGRREHLHTFRAVFR
EPLYPAFSMHSHTPESWITLHNGM
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttgtccaagcccgaggagctgctggcccacgagctgagctgccccatctgcctc
cagctcttctccgacccggtggttctcccctgcggccacaactactgcctggcctgcatc
cgcatgaccgccgactccacggacgacgcgcctccgcgctgcccggagtgtcgcgatgag
taccagggcgtggagaccctgaagaggaacttcaagctctgcagcatcatcgagggctac
cgagccgccgccgccgccgccgagacgcgcgcagacgagcccgacagcgcggcggaggcg
ccgtgctccggccgggagacggagtgggacgccaagagctgcgccacccaccggcgtcca
atcgagtacttctgttccgacgacatgagcctgatgtgcggcgtgtgcttctctgagggc
cgccactgcaaccacgacgtgctcaccctcgaggcggcggaggaggagatgaggcgcgcg
ctggagaaccgcagcacgctggtttcgcagaggctgcacatgaccgagagtctccttcag
gtgacggcgaaggagcagggagcagctgaagccatcgggaacaaactggccaacaaggcg
gtcactgtcatggagagtatggctgctctagtggacgggtacagggactgtctgcgtctg
ctgttggaggaggagaagaacatgcgcaggaaaagctggcaggtgggactggatgctctg
gaagtgcaacagcagcagttagtgcaggcccagcaacgtgccacgcaggccctcagcgag
acggacacgtgcaccttcatgcaaaggttcatgcagatcgaacctaagctgagagaagtt
gccacaggcgcctttccctccggcgtcccctcgaaagcaccgctcaaccccaagcgtctc
caggcgggcctcaaaacccaagacttccgctctgagatgacccgccacctggattccctc
cacatactcctgaaccccctggagctcaccttcaacctctgcaccgcccaccccaacctg
ttggtctccagcgatcagcgcacggtcaagtacagccccgtcaagcagacgtacccggat
cactcagagcgcttcacaagcgccccccagattctctgcacccaggggttctcggggggg
gagcacgtgtgggtggtggaggtggggggcagcagcatgtggtcgatgggcgtgtgttac
aagagcatccctcgccgcggggatcacagtcgtctgggtcacaactccgtttcctggcgg
ctgcagtggaaaaacggcaagctgacggtgtgccagtcctcctgcaacgtggctctgggg
gaaatgagccatcatccactgagggttgaggtagcgctggactacgaggcagggacgctg
atgttccacaacgtcagagggcgcagggagcacctgcacactttcagggcggtgttcaga
gagccgctttatccagcgttcagcatgcattcacacacaccggagtcctggatcacactg
cacaatgggatgtaa
DBGET
integrated database retrieval system