Gasterosteus aculeatus (three-spined stickleback): 120829739
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Entry
120829739 CDS
T07457
Symbol
sox18
Name
(RefSeq) transcription factor SOX-7
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120829739 (sox18)
Transcription factors [BR:
gat03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120829739 (sox18)
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Ortholog
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GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
DUF6640
Motif
Other DBs
NCBI-GeneID:
120829739
NCBI-ProteinID:
XP_040050039
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All DBs
Position
12:complement(7550998..7557887)
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AA seq
573 aa
AA seq
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MNSAKTGSTRETLLHAGRMSLGGRWVSGTPSPASDSEPGFEQNISGDCSSPDDLRSGNMM
RAERRLCLTPSSGGQSPDLSHAGGLLPGAADGKAVGGEQRIRRPMNAFMVWAKDERKRLA
VQNPDLHNAVLSKMLGQSWKALSATDKRPFVEEAERLRVQHLQDHPNYKYRPRRKKTTKK
LKRVEPGLLLHSLAQGGAPGLGLGSGISPLGAESVHGGSAYGHHHHSHHLLHPLGHFRDF
QAQGHSDLESYGLPTPEMSPLDILEDRAGESVFFPQHMQEETAMGGWSGYNHHLHHHNQH
YSHNYNNHSHTTMNGKETHSLGSGISGSASLSTCLSPSRDSRVDTRMNSAESNMTLSMSS
RLSHTSSHHIALRSPVKCPPPPSDSSSPVPYSQATINLPELVKSHQMPHQPIAPVSYFGQ
MYGNSAPNATYYMPSHLGQLSPPPETSHSSCPSSSIPHFPPLHLEPSNQNESSCNLVSSS
AEFWSEVDRHEFDQYVNVGRGEEAYVGGAGCGGGSKVLIGHSSSDGGSNMSSSLINRDVS
SILSGGCEEESSPLISALSDASSAVYYSACITG
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagccaagaccggttcgaccagagagacccttttgcacgccggccggatgtct
ctcgggggccgctgggtgtcggggaccccgagccctgcttccgattctgaaccgggtttc
gagcagaacatctccggggactgcagttctcccgatgaccttagaagtgggaacatgatg
agagcagaacggaggctctgcctgacaccgagttcagggggacagagtccggacctgagc
catgcaggaggtcttctgccaggcgcagctgatgggaaggctgtggggggagagcagagg
atccgcaggcctatgaacgccttcatggtctgggccaaagacgagaggaaacgacttgcc
gtgcagaaccctgacctacacaacgctgtgctcagcaagatgctaggccagtcatggaaa
gccctgagtgcaacagataaacgaccatttgtggaggaagcggaacgtctccgtgtgcag
cacctccaagatcaccccaactacaagtacaggcctcggcgtaaaaagaccaccaaaaaa
ctcaagcgggttgaaccggggcttctgctgcatagtttagcccagggaggggcaccagga
ctcggattaggatctggtatcagccccttgggggcagaaagtgtccatggaggttcagct
tatgggcatcatcatcactcgcaccacctgctgcatcctctagggcacttcagggacttt
caggcccaaggacactcagacctggagagctacggcctgcccactccagagatgtcccct
ctggatattctggaggacagagctggggaatctgtgtttttcccccaacacatgcaagag
gagacagcgatgggaggttggagtggttacaatcatcaccttcaccatcataaccaacat
tacagccacaattacaataaccacagtcacaccaccatgaatggtaaagaaacacacagc
ctgggttcaggaataagtggtagtgccagtttaagcacctgtttgagtccaagtagagac
tccagagtcgatacaagaatgaattctgcggagtcaaatatgaccttgagcatgagctct
aggttaagtcacacctctagtcaccacattgccttgaggagccctgtcaagtgcccgcca
cctccctccgactcctcctcccctgttccctactctcaggccaccatcaatctccccgag
ctggtaaaatcacaccaaatgccacatcaacccattgctcctgtcagctactttggccaa
atgtacgggaacagcgctccaaacgcgacatattacatgccctctcatctgggtcagctt
tcacctcctcctgaaacatctcattcttcctgcccatcctcttccatcccccacttccct
cctttgcacctggagccttcaaatcaaaacgagtcctcctgcaatttggtgtcttcttct
gctgagttttggtcggaggtggacaggcatgaatttgaccagtatgtaaatgtcggaagg
ggagaggaggcctacgtaggtggcgccggctgtggcggcgggtccaaagtcctgattggc
cacagcagcagcgatggcggtagtaacatgagtagcagtttaattaacagggatgtcagc
agcattctgagtggtggatgtgaggaagagagcagccctcttatatctgctctttctgat
gcaagcagcgctgtgtattacagtgcctgtatcactggataa
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