Gasterosteus aculeatus (three-spined stickleback): 120829812
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Entry
120829812 CDS
T07457
Symbol
ube4b
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04120
Ubiquitin mediated proteolysis
gat04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120829812 (ube4b)
04120 Ubiquitin mediated proteolysis
120829812 (ube4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120829812 (ube4b)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120829812 (ube4b)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
U-box type E3
120829812 (ube4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
120829812
NCBI-ProteinID:
XP_040050224
UniProt:
A0AAQ4Q9I5
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All DBs
Position
XII:11461724..11477809
Genome browser
AA seq
1379 aa
AA seq
DB search
MEELSADEIRRRRLVRLAGGQTSQPSTPLSTPLTSPQRETPPGPLPGPSGVALQPLPPAS
SQLLGLNVHSGTPASSPMGTSGVAYGSQSSEGLSSLSSSPSNSLETQSQSLSRSQSMDID
TASCEKSMSQVDVDSGIENMEVEDSDRREKRNLPEKEPSANSDVSEEQALQLICKILRVS
WKEQDRDVIFLPSIAAEFHQNPKDVYSDFKDLIGQILMEVLMMSTQSRVHNPFASLTATS
QPIAAAKSPDHRLTLVQPSSQGGSPMAPSAGSFGASSLSSLYGCGSPHSMALDAAKRTSP
SLPTPTTPTVASNASTPQFIVPPSPPAAATPRHTLNPPTAPMPISQRYRPYSVTSPWGAP
SPSSPGQRGFSFPGPSPSPAGPSVPPNTPSAGPPPSPHSLSLSSPRVRNQPSSTPLSMVP
PSPRSNTRQAAFASRIPPSSPLSVLFSALSDMSQDSSDEDSEEEEDFSQVQFGSSLGASG
GGMSCNSASDRFTIETCKETEMLNYLIERFDSVGMEERKAPKMCSQPNVSQLLSNIRSQC
ISHIALVLQGTLTQPRSPLHQSLLVPYLLCRNLPYGFIQELVRVTHQEEGVFSLIFTPIL
HGLALAVKECSFDSDNFKFPLMALAELCEIKFGKTHPVCNLVTSLPLWCPQPLSPGCGRE
IQRLSYVGAFFSLSVFAEDDTKVGDKYFSGPAITTENTRVVSQSLQHYLEAARGDLFKVI
HNILLNGETREPALNYMAALVNYNVKKAQMQTDDKLVSTDGFMLNFLWVLQQLSMKIKLE
TVDPYYIFHPRCRLAVSLEETRLKATMEELKSWLTQLHEDPNKFSEPKFPTECFFLTLHA
HHLSILPGCRRYIRRLRAIRELNRTVEELKNSESQWKDSPLASRHREMLKRCKTQLKKLV
RAKACADVGLLDENLLRRCLQFYSTVIQLILRMVDPAYPNINLPLHPEIPKSFAALPEFY
IEDVAEFLLFVVQYSPQVLYEPCVQDIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPA
VQPRTQRFSEMMENHPLSVKQLVPALMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLW
QNLAHHGTFMEEFNSGKQFVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWEQL
PREQQQSRQSQLTQDERVSRSYLALATETVEMFHILTKQVQKPFLRPELGPRLAAMLNFN
LQQLCGPKCRDLKVENPEKYGFEPKKLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFE
EVISKMKKAGIKSSIAIEKFKLLSEKVEEIVAKNSQSEMDYSDAPDEFKDPLMDTLMTDP
VILPSGNIMDRSIILRHLLNSPTDPFNRQPLTESMLESVPELKERIHTWMREKQGGRLV
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctgagcgcagacgagatccgcagaaggcgactggtacgattggcaggggga
cagacgtcacagcccagcacccctctcagcacacccctgacgtctccacagagagagact
ccccccggacccctccccggaccctcaggtgtcgcactccagcccctgccaccagcttcc
tctcaattgttggggctcaatgtacacagtggtacccctgcctcgtcccctatgggcacc
tccggggtggcttatggtagtcagagcagcgagggtttgagctccctctccagctccccg
tccaacagccttgagactcagtcccagagtctgtcccgatcgcagagcatggacatcgac
accgcctcctgtgaaaagagcatgtcccaggtggatgtggactcagggatagagaacatg
gaggtggaggacagcgatcgcagggagaagaggaacttgcctgagaaggaaccctctgca
aactctgatgtctcagaagaacaggctctgcagctcatttgtaagatcctccgcgtatcg
tggaaggagcaggatagagatgtcatctttctcccttcaatagctgcagagttccaccag
aaccctaaagatgtgtactccgacttcaaagacctgattggccagatcctgatggaagtc
ttaatgatgtccacccagtcgcgtgtccacaaccccttcgccagcttgaccgccacctct
cagccaattgcagcagccaaatccccggaccaccgtctgacgctggtgcagccctccagc
caaggtggcagccccatggcccccagtgcagggtctttcggagccagctctctgtccagt
ctgtatgggtgtggtagtcctcactcgatggctttggacgcagccaagaggacgtccccg
tctctccccacccctactacacccactgtagcctccaatgcctccaccccacaattcatt
gtgccgccgagcccccccgctgccgctactccacgacacacactcaaccctccaaccgcc
cccatgcccatctcccaacgctatcgcccttactctgtcacctctccttggggggctccc
tccccatctagccccggccaaagagggttcagcttccctggaccgtctcccagtcctgca
gggccctctgttcctcctaacaccccatctgccgggccgcctcccagcccccattccctt
tccttgagctcccctagagttcgcaaccaaccgtcctccacccccctttccatggtgccc
ccttctcccagatcgaatacccgacaggcggcctttgcttccaggatcccaccgtctagc
cccttgtcggtcctgttctctgctctctctgacatgtctcaggacagcagtgatgaagat
tctgaggaagaggaggatttttcacaggttcagtttgggtccagtcttggtgcatctgga
gggggaatgtcctgcaattcagccagcgatcgctttaccatcgagacatgcaaagagaca
gagatgctgaactacctcattgagcgttttgacagtgttggcatggaggagaggaaagct
cccaagatgtgtagccaaccaaatgtcagccagcttctcagcaacattcgctcccagtgc
atttctcatattgccctggtcctgcaaggcaccctgacgcagccacggagccctctccat
cagtctttgcttgtaccttatctgctgtgtcggaacctaccatatggcttcattcaggag
ctggtgcgcgtcacccaccaggaggaaggggtcttcagtctgatcttcactcccatcctc
cacgggctggctcttgcggtgaaagaatgttccttcgacagtgacaactttaaattcccc
cttatggcattagctgagctttgtgaaatcaagttcggaaagactcacccagtgtgcaat
ttggtaacgtcgctgcctttgtggtgtccccaacccctgagccctggttgtggcagagag
atccagagactttcctacgtgggagctttcttcagcctttctgtgttcgctgaggatgat
acaaaagtgggagacaagtatttctctggcccagccatcaccacggagaacacgcgagtc
gtcagccaatcattgcagcactacctggaggccgctaggggggacctgttcaaagttatt
cataacatcctactaaatggagaaacgcgtgagccagctctcaattacatggcagcgctg
gtcaactacaatgtgaagaaagcgcagatgcagaccgatgacaagctggtgtcgacagac
ggcttcatgctcaacttcttatgggtgctgcaacagctgagcatgaagatcaagctggag
acagtggacccttactacatcttccacccacggtgccgccttgctgtcagccttgaggag
acgcgcctgaaagccaccatggaggagctcaagagctggctgacccaactgcatgaagac
cccaacaagttctcagaacccaagttccccaccgaatgtttcttcttgacgctgcacgcc
caccatttatccatcctgcctggctgccggcgttacatccgcaggttgcgagccatccgc
gaactgaacaggactgtagaggagctgaagaacagtgaaagccagtggaaagattctccc
ctggctagtcgtcacagagagatgctcaagcgatgcaaaacccagctcaagaaactggtg
cgagccaaagcttgcgctgacgtaggccttctggacgagaacctgctgcgcagatgtctg
caattctacagcaccgtcatccagctcattctacgcatggtggaccctgcctaccccaac
attaacctgccgctgcaccccgagattcccaaaagcttcgccgctctgcctgagttctac
attgaagatgtggccgagtttctgctttttgtcgtgcagtattctccccaggtgttatat
gagccgtgtgtccaggacattgtcaccttcttggtggtgttcatctgcagccagaactac
atcaggaacccttacctcatcgccaagttggtggaggtgctgtttgtcaccaaccctgct
gtacagcctcgtactcagcgattctctgaaatgatggagaaccatccgttgtctgtcaaa
caactggtccccgccctcatgaagttctacactgatgtggaacataccggcgccaccagc
gagttctatgataagttcactatacggtaccatatcagcaccatcttcaagagtctgtgg
caaaaccttgcccaccatggaaccttcatggaggagttcaactctggcaagcagtttgtg
cgctacatcaacatgctgattaatgacaccaccttcttgttagatgagagccttgagtct
ctcaagcgtatccacgaagttcaagaagagatgaagaataaggagcagtgggaacagctg
cccagggagcagcagcagagtcggcagtcgcagctgactcaggatgagcgggtgtcccgc
tcctatctggccctggccacagagacggttgaaatgttccacatcctcaccaagcaggtt
cagaagcctttcctcaggcctgagctggggcctcgtttagctgcgatgctaaacttcaac
ctccagcagctctgtgggcctaagtgtcgggacctgaaggtggagaaccctgagaagtat
ggctttgagcccaagaagctcttggaccagctgaccgacatctacctacagctggactgt
gcccgcttcgctaaagccattgcagatgaccagcggtcgtacagtcgagagctcttcgaa
gaggtgatctcaaagatgaagaaggctggtattaagtcttctatcgccattgaaaaattc
aagctactatcggaaaaggtggaggaaatagtggccaagaactcccaatctgaaatggac
tacagcgacgcacctgacgagttcaaagaccctctgatggacacgctgatgactgaccct
gtgattctgccttcgggcaacataatggatcgatccatcatcctgcgccacctgcttaac
tcccccactgatcccttcaacagacagccactcacagagagcatgctggagtccgtgcct
gagctgaaggagaggatccatacctggatgagagaaaaacaaggcggccggcttgtctga
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integrated database retrieval system
