KEGG   Gasterosteus aculeatus (three-spined stickleback): 120829915
Entry
120829915         CDS       T07457                                 
Symbol
kdm5c
Name
(RefSeq) lysine-specific demethylase 5C isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
gat  Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:gat00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:gat01009]
    120829915 (kdm5c)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gat03036]
    120829915 (kdm5c)
Enzymes [BR:gat01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     120829915 (kdm5c)
Protein phosphatases and associated proteins [BR:gat01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120829915 (kdm5c)
Chromosome and associated proteins [BR:gat03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    120829915 (kdm5c)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID JmjN zf-C5HC2 PHD TFR_dimer
Other DBs
NCBI-GeneID: 120829915
NCBI-ProteinID: XP_040050456
UniProt: A0AAQ4RA29
LinkDB
Position
XII:complement(4944563..4961051)
AA seq 1592 aa
MEGEEFVPPPECPVFEPTWEEFQDPLGYIAKIRPIAEKSGICKIRPPPDWQPPFSVELDT
FRFTPRIQRLNELEAETRVKLNYLDRIARFWEVQASSLKIPHIERRILDLFSLSRIVTDE
GGFEMVCKERRWARVAQRLGYPPGKNIGSLLRSHYERIVYPFEVFHSGASIPNCKPKHYD
GEDVDKEYKPHSIPLRQSVQPSKTSSYGRRANRCQPEGPEDLAPHPLTTGSQLIPAPEPT
EEDIEKNPELKKLQIYGAGPKMMGLGLVARYKGIRKKDELPQTVTVKESISPAPGDASVK
AESVEPPERQSDGGASSPQPPPPTVKVKTEVKKEEPDVAAGKKEEGGVTDGPCTKMTMRL
RRNLGNPQSVDSFVCRMCGRGDDDEKLLLCDGCDDNYHTYCLLPPLTDPPKGNWRCPKCV
AAECKKPSEAFGFEQATREYTLQSFGEMADAFKADYFNMPVHMVPTELVEREFWRLVSSI
EEDVVVEYGADIHSKEFGSGFPMKNGKKELTKEEEGYARSGWNLNVMPVLEQSLLCHING
DISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSVAAERLEEVMKKL
TPELFEFQPDLLHQLVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFA
EAVNFCTADWLPAGRSCIEHYRRLRRYCVFSHEELTCKMAASPEKLDLNLAAATHREMFI
IVQEERKLRKGLMQRGITEAEREAFELLPDDERQCDNCKTTCFLSALACSNCPERLVCLY
HTQDLCNCPSEKLYLRYRYTLDELLAMLHRLKVRSESFDSWANRVKEALEQEEGNKIGID
DLERLKVEAAEKKFPDNELLRKLNTVLKDIERCHLTSTELLSNPKTGEGKMTLAELKSLV
ETMQNLPCVITQLEDVQVVLRAVEEFRSRAQLLANNRDWRRDSAPPEQLEALLAQGAELL
VVVPECDLLRGLKEQGHWLAEVRRTLGTEGGERQEVTLEVLRSLMEAGCNVPQSVSVETA
MAELQELLTIAERWEEKAQICLEQKQKHPLSTLEAIVNEAHLIPVKLPNILALQDCLTRA
QAWVTDLEEIQNGEHYPCLDDLEGLVAIGRDLPVFMEELRQLELQVASAHSWRDKATKTF
LKKSSQHSLLEVLCPFAKRRARRDEVALLDEPSDDSDTNTVGLSAQDLRDPAAIVIAFKE
GEHQEKEALLRLQKVNLYKSGLNAASCEETKEGKDNGRWEDAMETDTSSHSEDSVKGNGN
HAGPPQPVCVCTGQPRAPQLRCHLCKDWFHGGCVPSPALLPSSGPAGNPLCWWDWDSRFL
CPRCQRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAITWQGRAKEAVETPEVQL
ALQRLQDLKETLHCDAEEKENAGQETPGSGVIVLSDSEGGEAEEGVIDLTDENSPKKKSK
ESNGSKAGCENGLSQKSNVTGVGSLLPLLPLLKGQVVELLPATKVQLEELQLEGDLLEVS
LDQTLIIHRVLQAASVPPRETLRTLIQIELEEQRRTSRGRAKDSKRKRKSHRGGSGDAAG
KRSPDTSESKKTCPLSISPSPRLPVQTNPEIL
NT seq 4779 nt   +upstreamnt  +downstreamnt
atggagggggaagagtttgtgcctccaccggagtgtccagtgtttgagccgacatgggag
gagttccaggacccactgggctacattgccaagattcgtcccattgcagagaagtctgga
atctgcaaaattcgtcctccaccagactggcaaccaccattttcagtagagctggataca
ttccggttcacaccccgcatccagaggcttaatgagttggaggcggagaccagagtgaaa
cttaattatttggaccgcatcgccaggttttgggaggtccaggcatcctccttgaaaatc
cctcatattgaacggcgcatccttgatctcttcagcctgtcaaggattgtgacggatgaa
gggggatttgagatggtctgtaaggaacggcgctgggctcgtgtagcccagcggctcggc
tatcctccgggcaagaatattggttctctgctgcgctcgcactacgagaggatcgtctac
ccctttgaagtgttccattctggtgccagcataccgaattgcaagccaaagcactatgat
ggtgaggatgtggacaaagagtacaagccccactccatccccctgcgacagtccgtgcaa
ccatcgaaaacaagcagctacggacgcagagccaaccgctgccagccagagggtccagag
gatctggccccccatcctctcaccactggctctcaactcatccctgcgcctgaacccaca
gaggaagacatagagaagaacccagaactgaagaagcttcagatctacggcgcagggccc
aagatgatgggacttggacttgtggcgaggtacaaaggcatcaggaagaaagatgagctg
cctcaaactgtaaccgtcaaggaaagcatctctcccgctcccggtgatgcttcggtcaaa
gcggagtcagtggagcccccagagaggcagagcgacggaggcgcatcgagcccccaaccg
ccgcctcctaccgtcaaggtaaagacggaggtgaagaaagaagagccggacgtcgccgct
ggtaaaaaggaggagggtggcgtgaccgatgggccgtgtaccaaaatgaccatgaggctt
agacgcaacctgggcaacccacagagtgtggactcctttgtgtgtcggatgtgcggtcgg
ggagacgacgacgagaagctcttgctgtgtgacggttgcgatgataactaccacacctac
tgtctactgccccccctcaccgacccccccaaggggaactggcgttgccctaagtgtgtg
gccgcggagtgcaagaaaccctcggaggcattcggcttcgaacaggccacccgcgagtac
acgctgcagagcttcggggaaatggcggacgctttcaaagcggattacttcaacatgcca
gtccatatggttcccactgagctggtggagagagagttctggaggctggttagtagcatt
gaggaagacgtggtcgtcgagtacggggccgacatccactctaaggagttcggcagtggc
ttcccgatgaaaaatggcaagaaggagctcacaaaggaagaggagggatacgcccgcagc
ggctggaacttgaatgtgatgcccgtgctggagcagtcgctcctttgccacattaacgga
gacatctccgggatgaaggtgccctggctttacgtcggcatggtgttctctgcattctgc
tggcacatcgaggatcactggagctactccatcaactacctgcactggggtgaacccaag
acgtggtacggggttccttccgtggcggccgagcgactcgaggaggtgatgaagaagctg
acgccagagctgtttgagtttcaacctgacctcctgcaccagctggtcaccatcatgaac
cccaacatcctcatgtctcacggtgtaccggtcgttcgcaccaaccagtgtgccggtgag
ttcgtcatcaccttcccccgagcctaccacagtggcttcaatcagggatacaactttgct
gaagccgttaacttctgcactgccgactggctgcccgctggccgttcctgcatcgagcac
taccggcgtctcaggaggtattgtgtgttctcccacgaagagctcacctgcaagatggcg
gccagcccagagaaactagacctcaacctggccgcggctacacaccgggaaatgttcatc
attgttcaggaggagaggaagctgcggaagggtctgatgcaaaggggcatcactgaagcc
gagcgcgaggcttttgagctgctgcccgacgacgagagacagtgtgacaattgtaagacg
acgtgcttcctctctgcgctggcctgctccaactgtcccgagagactagtgtgcctctat
cacactcaggatctgtgcaactgcccctctgaaaaactctacctcagatacagatacacc
ctcgatgagctgttggccatgttgcatagattaaaggttcgttctgaatccttcgattcc
tgggccaacagagtgaaggaggcacttgagcaggaagaaggaaacaagataggaattgac
gacctggagaggctgaaggtggaagcggcggagaaaaagtttcccgacaacgaacttctg
cggaaactcaacactgttcttaaagacatagaacgctgccatctgaccagtacagaactc
ctcagtaacccaaagaccggtgaaggtaagatgacgttggccgagctgaaatccttggta
gagactatgcagaacctcccgtgtgtgatcacccagctggaggatgtgcaggtggttctg
cgggcggtggaggagttccggagccgcgctcagttactggccaacaacagggactggagg
agggactctgcgccgcccgaacagctggaggctctgctggcgcagggggccgagctgctc
gtggtggtgccggagtgtgatttgctccggggcctgaaggagcagggccactggctcgcc
gaagtgaggcgcaccctgggcaccgagggaggggagaggcaggaggtgacgttggaggtt
ttgaggagcctgatggaagccggctgcaacgttccccagagtgtgtccgtggagacggcc
atggcggagcttcaggagctgctcaccatcgcggagcgttgggaggagaaggcacagatc
tgccttgagcaaaagcaaaagcatcccctctccacactagaggcgatagtaaacgaggcc
cacctgatcccagtcaagctgcccaacattcttgctctgcaggactgtctcactcgggca
caagcctgggtgacggacctcgaggaaatccagaacggggagcattacccctgcctggac
gacctggagggcctggtggccatcgggagagacttgccggtcttcatggaggagttgaga
cagctggaactgcaggtagccagcgctcattcctggagggacaaggccaccaagaccttc
ctgaagaagagcagccagcacagtctgctagaggtgttatgtccctttgcaaaaaggaga
gcgaggcgagatgaggtggcgctgttggacgagccttcagacgattcggataccaacact
gtgggcctctctgctcaggacctgagggacccggccgccatcgtgattgcattcaaagaa
ggggagcaccaggagaaggaggccctgctgaggttacagaaagtcaacctgtacaaatcg
ggactcaacgccgcgagctgcgaggagaccaaggagggcaaggacaacgggaggtgggag
gacgccatggagacggacacgtccagccactcggaggactccgtgaagggcaacggcaac
cacgccggcccgcctcagccggtgtgcgtgtgcaccggtcagcctcgcgcgcctcaactg
cgctgtcacctttgcaaggactggttccacgggggctgcgttccctcccccgccctgctc
ccttcctcggggccggccgggaacccgctgtgctggtgggactgggactctcgcttcctg
tgtccgcggtgccagcggtcgcggcgccctcgcctggagaccatcctggcgctgctcgtg
gccctgcagcggctgccggtgcggctgcccgagggcgaggcgctgcagtgcctcaccgag
cgggccatcacctggcagggccgcgccaaggaggccgtggagacgcccgaggtgcagctg
gccctccagaggctccaggacctcaaagagacgctgcattgcgacgcagaggagaaggaa
aacgcggggcaggagacgccggggagcggcgtgattgttttgtcggactccgagggaggg
gaagcggaggaaggagtcatcgatctgacggacgagaattccccaaaaaagaaaagcaag
gagagcaacggaagcaaggccggatgtgaaaacggcctcagccagaagtcaaatgttaca
ggcgtggggtctctgctgcccctgctgccgttgctcaaaggccaggtagtggagctttta
ccagcaaccaaagtccagctggaggagctgcagctggagggagatctgctcgaggtgtcc
ttggaccagaccctcatcatccacagagttctgcaggctgcttctgttccacccagagaa
acgctgcgcacactcattcagattgagcttgaggagcagaggcgaaccagccgcgggcgc
gccaaggactccaaacgaaagcggaagagccaccgaggaggcagcggggacgcggcggga
aagcgctcgccggacacctcggagtcgaagaaaacctgcccgctcagcatcagcccctcc
cctcggttgcctgtccagaccaatcccgagattttgtga

DBGET integrated database retrieval system