Gasterosteus aculeatus (three-spined stickleback): 120830166
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Entry
120830166 CDS
T07457
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03082
ATP-dependent chromatin remodeling
gat03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120830166 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120830166 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gat01009
]
120830166 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120830166 (smarcb1a)
03036 Chromosome and associated proteins [BR:
gat03036
]
120830166 (smarcb1a)
Protein phosphatases and associated proteins [BR:
gat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120830166 (smarcb1a)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120830166 (smarcb1a)
SWI/SNF complex
120830166 (smarcb1a)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120830166 (smarcb1a)
PBAF complex
120830166 (smarcb1a)
SWI/SNF complex
120830166 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
120830166
NCBI-ProteinID:
XP_040050605
UniProt:
A0AAQ4NMW8
LinkDB
All DBs
Position
XIII:19879391..19883875
Genome browser
AA seq
374 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFHMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAISICTEPPAYLSREQKAKRSSQW
VPTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRL
DMEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTD
SLLEEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCCELGLGGEFVTTI
AYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRN
TRRMRRLANTAPAW
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttagcaaaacgtttggacaaaaaccggttaaatttcagctcgaggaagatgga
gactttcacatgatcggatcggaggttggaaactacctgcgcatgttcagaggctccctg
tacaagagatacccgtcgctatggaggaaactggcttcagtagaagagcggaagaagata
gtggagtcctcccacgatcacggctacactcagctggccaccagcgtgactctgctgaag
gcctcggaggtcgaggagatcctcgagggaaacgacgagaagtacaaagcgatctccatc
tgcacggagccgcccgcctacctcagcagggagcagaaggccaagaggagcagccagtgg
gttcccacgctgcccaacagttcccaccacctggacgccgttccctgctccaccaccatc
aaccgcagccggctgggacgcgacaagaagaggacgttccctctgtgctttgatgaccac
gacccggcggtgatccacgagaacgccactcagtcggaggtcctggtgccgatccgtctg
gacatggagatcgaggggcagaagctcagagacgctttcacctggaacatgaacgagaag
ctgatgacgcccgagatgttcgctgagatcctctgtgacgacctggacctcaacccgctg
gccttcgtccccgccatcgcctccgccatccggcagcagatcgagtcgtaccccacggac
agcctcctggaggagcagacggaccagagggtcatcatcaagctcaacatccacgtgggg
aacatctcgctagtggaccagttcgagtgggacatgtcggagaaggagaactccccggag
aagtttgccctgaagctgtgctgcgagctgggcctcggcggcgagttcgtcaccaccatc
gcctacagcatccgggggcagctgagctggcaccagaggacctacgccttcagtgaaaac
ccgctgcccacggtggagatcgccatcaggaacacgggcgatgccgaccagtggtgcccc
ctgctggagacgctgaccgacgctgagatggagaagaagatcagggaccaggacagaaac
accaggcggatgaggcgactggccaacacggcccccgcatggtag
DBGET
integrated database retrieval system
