Gasterosteus aculeatus (three-spined stickleback): 120830232
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Entry
120830232 CDS
T07457
Symbol
pole
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03030
DNA replication
gat03410
Base excision repair
gat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120830232 (pole)
03410 Base excision repair
120830232 (pole)
03420 Nucleotide excision repair
120830232 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
gat03032
]
120830232 (pole)
03400 DNA repair and recombination proteins [BR:
gat03400
]
120830232 (pole)
Enzymes [BR:
gat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
120830232 (pole)
DNA replication proteins [BR:
gat03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
120830232 (pole)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
120830232 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
zf-RING_13
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
120830232
NCBI-ProteinID:
XP_040050680
LinkDB
All DBs
Position
XIII:9198246..9211788
Genome browser
AA seq
2294 aa
AA seq
DB search
MVLQNSGRYRAQRGQSGGDHENQDDGAAMSALKRLERCQFTDEMDAPIRFTRMREPGEEI
GAGLINKHPAEILDDDKRMISAVDYYFIQEDGSRFKVALPFKPYFYIATKKNCEREVISY
FSRKFHGKVAKLEVLSKEDLDLPNHLVGLKRSYIKLSFSTLDDLLKVKREINPAVRKNRE
REQSNDSYTSMLSSALAGGNVTSADEDGTSRSISDQLDNIVDMREHDVPYHVRLSIDLKI
HVAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVMAFDIETTKLPLKFPDAESDQIMMISY
MIDGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDDEAALIQRWFDHVQETKPNI
FVTYNGDFFDWPFIETRAALHGRTMYREIGFQKDNQGEYKSSQAIHMDCLRWVKRDSYLP
VGSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFI
FALCTIIPMDPDEVLRKGSGTLCEALLMVQAFHANIIFPNKQEQVFNKLTDDGHVMDSET
YVGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEKTMRHAIEEEEKIPLDQVTNFNE
VCEEIKNKLTSLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNK
PGASCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPFFPNGPPRAFHTLNREEQAKH
EKKRLADYCKRAYKKTHVTKREQRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKK
LSAAQDSGDAAEMKRCRNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYT
GANIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNDKKPKVTISYPGAMLN
ILVKEGFTNDQYHELVDPASLSYNIRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAV
FNEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLY
SKAANMPDTELFELISENRSMSRKLEDYGEQKSLSISTAKRLAEFLGDQMVKDAGLSCRY
VISRKPEGSPVTERAIPLAIFQAEPSVTKHFLRKWLKMPSLHDLDIRSILDWGYYIERLG
SAIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRKVAHQ
PLGAGHAADIEDFGMPARPLQPAILITTKRKRASQGEDSQVESQDVELTQSWREILGPPP
TLGKTQEERLVWLRYHKKKWELQLRQRKERKKRRRLLDGQAQTVGGGVIRDGPTTGLGSF
LRRTARSILDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEG
ATYKKVNRMLPRSNIVYYLYEYCVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRAL
VRLGCVCMINKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKA
LFGLFIPSQRKASIFVLDTVRSNQMPNLTNLYTAERTALLEKTSEDLLPPEKHNFEVRAE
NDAKAINRALQRILLNYKDERRGPTLIAVQSNWDLRRLAAAMPVLEEFPVVPVHVVDEIS
YNVLDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLR
KHNHLMWLSPTARPDLGGKEADDSRLVMESDDRGSVEINSQGCYSTVCVELDLQSLAVNT
ILQSQHVNDMEGGASLGVSFDVIQQASLEEMMSGNQGASALASYDETALCSNTFRILKSM
VVGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVSEFKR
LGSTVVYGNFNRIMLCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLLWMD
PSNYGGVKGKLPSSIVSGEVGAKQKKQSAGEGDEGSDDEDDEGAEAEEDDGDRDEVEELI
ESNWNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQ
AVGDLSALPGMISFSQEYVSDELTQNFFTITQKIQKKVTGTRNVNQASEMFPVLPGSHLP
LNNPALEFIKYVCQVLSLDSNIVNQVNKLKRDLLRLVDVGEFSGEAQFSDPCSSYVLPEV
ICHQCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETECIETALVEALQKKLMSYTL
QDLVCTKCKGVKEANMPLYCRCAGDFHLTFPIKSFSEQIKVFRNIASHYSMSFLEETIDW
VVVMSPQISQTLNE
NT seq
6885 nt
NT seq
+upstream
nt +downstream
nt
atggttctacaaaacagcggacggtaccgggcgcagcggggacaaagcggaggggaccat
gagaaccaggacgatggagccgcgatgtcggccctcaagcggctggagcgctgccagttc
acagacgagatggacgccccgattcggtttacaagaatgagagaaccgggggaagaaatc
ggggctgggctgatcaacaagcatcctgctgagatcctggacgatgacaagaggatgatc
agcgctgtggactattacttcatacaggaagatggaagcaggtttaaggtggcccttcca
ttcaagccgtatttttacatcgctacaaaaaagaactgtgagagagaagtcatctcatac
ttttcgagaaagtttcacggcaaggtggcaaagcttgaagttctctcaaaagaggaccta
gacctgcccaatcatttagtcggcctgaagagaagctacatcaagctgtcattcagcacc
ttggacgacctcctcaaggtcaagcgtgagatcaatccagcagtgcgcaagaacagagag
cgggagcagtccaatgactcctacacatcgatgctctcgagcgccttagcaggaggcaac
gtgacctcagccgatgaagacgggacgtcgaggagtatttcagaccagctggacaacata
gtggacatgagggagcacgacgtgccctatcacgtgcggctgtccatcgacctcaagatc
cacgtggcccactggtacaatgtccgatacagaggcagcgcttacccaccggagattgtt
cggagagacgatcttgtagagcgaccggaccctgttgttatggcttttgacattgagact
acaaagcttccactgaagttcccggacgcagagagcgatcagattatgatgatttcgtac
atgattgacggacaggggtttctgatcaccaacagagagatcgtctctgagaacattgaa
gactttgaattcactcccaaacctgaatatgaagggcctttcacagtcttcaacgaggat
gacgaggcggctctcattcagaggtggtttgatcacgttcaagaaaccaagccaaacatc
tttgtgacctacaacggagacttctttgactggcctttcatagagacgcgggccgcgctg
catggacgcaccatgtacagggagatcggtttccagaaggacaaccagggggagtacaag
tccagccaggccatccacatggactgcttaaggtgggtgaagagagacagctatctgccg
gtggggagtcataacttgaaggcggcggcaaaggccaaattgggctacgacccggtggag
ctggacccggaggagatgtgccgcatggccactgaagagccacagacattagctacctac
tctgtgtccgatgccgtggccacttattacctgtacatgaaatatgttcaccccttcatc
ttcgctctgtgcaccatcatccccatggacccggatgaggtgctgcgtaaaggttctggg
actctttgcgaagcgctgctcatggtgcaggccttccacgcaaacatcatcttcccaaac
aagcaggagcaggtttttaacaaactgacagacgacggccacgtcatggactccgagacc
tacgtgggcggtcacgtggaggcgctggagtcgggagtgtttcgcagtgacatcccctgc
cgtttcaagatgaacccagctgcatttgacttcttgctgcaaagagtggagaagacgatg
cgccatgccatcgaggaagaggagaaaataccgttggatcaagtcactaactttaatgag
gtgtgtgaggagattaaaaataagctgacttccctgaaggaggtcccaaacaggattgaa
tgcccccttatctaccatctggacgttggggcaatgtaccccaatatcatcctcaccaac
cgcctgcagccgtccgcgatggttgatgaagccacttgtgctgcgtgtgactttaacaaa
cccggagcctcctgccagaggaggatggcctggcagtggagaggagaaattatgcccgcc
agccgcagcgagttccaccgcatccagcagcaactggagtctgagaagttcccgccgttc
ttccccaacggtccacctcgggccttccacactctgaacagggaggagcaggccaaacac
gagaagaaacgcctggcagactactgtaagagggcgtataagaagacccacgtcaccaag
cgggagcagcgagtcaccaccatctgtcagagagaaaattccttctacgtcgacactgtg
agagctttcagagatcgacgttatgaattcaaaggacttcacaaggtgtggaagaagaaa
ctgtccgctgctcaggacagcggagacgctgctgagatgaagcgctgcagaaacatggag
atcctgtacgactctctgcagctggctcacaaatgtattctaaactctttttacggctac
gtcatgaggaaaggggcgcgctggtactccatggagatggctggcattgtgtgctatact
ggagccaacatcatcactcaggccagagagctcatcgaacaaatcgggaggcccctcgag
ttggacacagatggtatctggtgtgtcctgcccaacaccttcccggagaactttgtggtg
aaaaccagcaatgacaagaagcccaaagtgaccatctcttacccaggggccatgctgaac
attttggtgaaggagggattcaccaacgatcagtaccacgagctggtggacccggcgtcc
ctcagttacaacatccggtcggagaacagcatcttctttgaggtggacggaccgtacctc
gccatgatcctgccggcctcaaaggaggaagggaagaagctgaagaaaaggtacgctgtg
tttaacgaggacggctctctggctgagttgaaaggttttgaagtgaagaggaggggggag
ctccagctcattaagatcttccagtcgtcagtttttgaggctttcctcaaaggaaccact
ctggaggaggtgtacgcctccgtggccaaagtggctgactactggttggacgttctgtac
agcaaggccgccaacatgccagacacggagctgtttgagctgatttcagagaatcgctca
atgtccagaaagctggaggactacggggagcagaagtccttgtccatcagcacagctaag
agactggctgagttcctgggagaccaaatggtgaaagacgctgggctgagctgtcgctac
gtcatctctcggaaacccgagggttcgcccgtcacagaaagagccattccgctcgccatt
ttccaggctgagcccagtgtgacaaaacatttcctccgtaagtggttgaaaatgcccagc
ctgcacgacttggacatccgctctattcttgattggggttattacatagagcggttgggg
agtgccatccagaaaatcatcaccatccctgcagctcttcaacaggtgaagaatccggtg
cccagagtgaggcacccggactggcttcacaagaaactcctggagaaaaatgacatctac
aagcagaagaaaatcagtgagctgttcaccagcgagggcaagagaaaggtggcccatcag
cctcttggagcaggccacgctgcggacatagaggactttgggatgccggccaggcctctg
cagccagccatcctcatcaccaccaagcggaagcgggcttctcagggagaggacagccag
gtggagtctcaggacgtcgagctcactcagtcctggagagagatcctggggccgccccca
actttgggaaagacacaggaggagaggctagtgtggctgcgttaccacaaaaagaagtgg
gagctgcagctgagacagaggaaggagagaaagaagaggaggaggctgctggatgggcaa
gctcaaactgtaggtggaggagtgatccgagacggccccaccaccggcctgggcagcttc
ctccgcagaacagcccgcagcatcctggacatgccctggcaaattgtgcagattgcagag
actagtcaccctggtctgtacaagttgtgggctgtgattggaaatgacctccattgcatg
aagctcaacattcctcgggtcttctatgtcaatcagaaagtcccaaaacaggaggaggga
gccacatacaaaaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctttat
gagtactgcgtaccagaagacatgtaccaggagcacatcaacgagatcaacgctgacctg
tctgccccggacattgaaggagtctatgaaacacaggtcccgttgctgtttcgtgcactg
gtgcgactcggatgcgtgtgtatgatcaataaacacgttgtgagggatctggctggcagg
gaggctgacacatttgacctggagcatctggagatgaggtctctagcccagttcagctac
ttggaacctgggagtgttcgccacatctacctgtatcatcacagtcagggtcacaaggct
ctgtttggcctgttcatcccctctcagcgcaaagccagcatctttgtcctggacacagtg
agaagcaaccagatgcccaacctgactaacctctacacagcggagcgcactgctctcctg
gagaagacgagcgaagacctcctgcctccagagaaacacaactttgaggtccgggctgaa
aacgatgcaaaggccattaaccgcgcacttcaacgcatactgctaaactacaaggacgag
cgccgtggccccaccctcatcgccgtgcagtccaactgggacctgcggcgcctggcagcg
gcgatgccggtgctcgaagagttcccagtcgttccggtacacgtggtcgatgagatcagc
tataatgtgctggactggcaacgccacggtgcccggcgcatgatccgccactacctcaac
ctggacagctgcttgtctcaggctttcgacatggccaggtattaccacttacctgtgggg
aacttgcctcaggatgtgtccatcttcggctcagacttgttcctggcgagacatctacgg
aaacacaaccatctgatgtggctttcgcccacagccaggcccgacctgggaggaaaagag
gccgacgacagccgactggtcatggaaagcgacgaccggggctctgtggagataaattct
caaggatgctattccacagtgtgtgtggagttggacctgcagagcctggcagttaacacc
atcctccaatcacaacatgtcaatgacatggagggaggagccagcctgggcgtcagtttt
gatgtgatccagcaggcctcgctggaggaaatgatgtcgggcaaccagggcgccagcgct
ctcgctagctatgatgaaactgctctctgctccaacaccttcaggatcttgaagagcatg
gtggttggctgggtcagagagatcacgcagtaccacaacgtgtacgcggacaaccaggtg
atgcacttctaccgctggctgcgctcccccagctctctgctctatgaccccgcgctgcac
cgcaccttgcacaatatgatgaagaaggtgtttctacagttggtttcagagttcaaacgt
ctcggctccactgtggtgtatggaaacttcaacaggatcatgctgtgcactaagaaacgc
aggatagatgatgccatcggctatgtggaatacatcaccaacagcatccactccagggaa
atcttccactcgctgtccatctccttctcccgttgctgggagttcctgctgtggatggat
ccgtccaactacggcggcgtgaagggcaaactgccctccagcatcgtgtctggagaggta
ggagccaaacagaagaaacagagcgccggggagggagatgagggcagtgatgatgaggat
gatgagggagcagaggctgaggaagatgatggtgatagggatgaggtggaggagctgatt
gagagcaactggaacatcatgcagtatctgccccaaactgcctcctgccagaaatacttc
ctcatgattgtctctgcctacattgcagcggtctatcacagcatgaaagaggagctgagg
cggaacgctcctggagcgacgccagtcaagagacgtggcggcagccaggcttcccagcag
gccgttggggatttgagtgcgcttcctggaatgatttccttctcccaggaatatgtgtcc
gacgagctgacacagaactttttcaccatcacacaaaaaatccagaagaaggtgactggc
accaggaatgtcaaccaggcctccgagatgttccctgtccttcccggatcccacctgcca
ctcaacaacccagctctggagtttatcaaatatgtctgccaggtcctttcacttgattcc
aacatagtgaaccaggtgaacaagctgaagagggacctcctgcgtctggtggacgtcgga
gagttttcgggggaagcccagttcagtgacccctgcagctcctacgtcctgcctgaggtc
atctgccaccaatgcaatttctgtcgtgaccttgacctctgcaaggacccatctgtggca
caagatggatccgttttgcctcagtggttctgctccaactgccaggcgcagtatgagact
gagtgcattgagacggctctggtggaggctctgcagaagaaactgatgagctacacgctg
caggacctggtgtgtacaaaatgtaaaggagtgaaggaggcgaacatgcctctgtactgc
agatgtgccggagactttcacctcacgtttccaatcaagagcttctctgagcagatcaaa
gtgtttcgcaacatagcgtcccactacagcatgagcttcctggaggagaccattgactgg
gtggttgttatgagcccgcagatcagccaaacgctcaatgagtga
DBGET
integrated database retrieval system
