Gasterosteus aculeatus (three-spined stickleback): 120831243
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Entry
120831243 CDS
T07457
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120831243 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120831243 (ttc37)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
120831243 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_1
TPR_14
TPR_19
TPR_17
TPR_11
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_9
ANAPC3
TPR_Slam
YceG_bac
Motif
Other DBs
NCBI-GeneID:
120831243
NCBI-ProteinID:
XP_040052488
LinkDB
All DBs
Position
XIII:complement(11339402..11351566)
Genome browser
AA seq
1565 aa
AA seq
DB search
MSNKEVKTALKSAREALKNKEFKDALKHCKAVLKLEKNNYNAWVFIGLAASELEQADQAQ
TAYKKAAELEPEQLLAWQGLANLYEKTDQWDFKVELPNIYQKLVELYASSDKSKCYEMIS
KLSDIYQADKEYLKLAKVWRQLIQVKEEEAVDKKELLQLWQQMTQLLSDCPDEQERDYET
QQHLITAFEKAMVLMDPVPGEQHKKASADYVKCLSKLPQEEPKMIEACKSMLSFYPNQSY
PLEVLCSHYLKTGVQNEDAVSCFSRLLDLAPNSGLGHLGLGTKALQEGRFKDAIKDLAQG
LKNMSSSRGWCNLAEAQFKMQKYSDCAISCSQGVTGCVSGDEELRVKLLEMKLEALVRSG
GDTAADQALETFSQIPDSEKDPVLVGLKGQAYLNKGRVDDALKVSSELLASHLNLTQGLV
LRGLAHLAQGQHQLVEESFLQAISQSPNCGEYHFLLGRLYWDMGEETRKDRSKAHTHLLK
AAKLDPNLACVFRYLGHYYLQVANDLDRSRRCYKKAFEMDNNDAESGAASVDLSMKQDDM
DTALAILQSVIEKATPGSAKWAWMRRGLYYLKIGAHQQAVADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPSSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIKNLFRAVEMRPDLSCLWKLLGDACT
AVGTVSPDVAQLLVPAPLAGSDNQSHTLSQAQTLKVGERCYAHALKLMPEVPSLWNDLGL
NYYRQSSLSCLTEDGQNSPSLLLEKAQQCLKKAIMMDSENHSFWNALGVISMSKGLENLA
LAQHCLIKSIQVEANNVVAWTNLGTLYLKNDNIELAHKAFKIAQSLEPLYVNCWIGQALI
AERVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDRSNRDSELYRYNIVQMNAISA
AQVSLTKYTERIQSDPFAFIMLGYLNEHLHLKRSALKAYKRAVELLTAMSSTEELAFALG
CYGRALCTAGLSEEAVCVYNSTPLQELSDLAGLALAYSRAGLIPESINAYERALAVASTE
KEKAYILTALALLQHRQGNQDSAKTLLFKCSMLKEPISESLLCLCALGLVHSDATLAAAA
LTELLKLGPGSVKVVEQRCLLTCALLALQGNYSAVQREASRAVHSNPGNPSLWALLSRLV
PQYHPKKANGGAIAGHVACLSSMTQGKRALLYSGVNQLANGRHSGEDSHRNALKTMQRAV
LLCPDDPATWAGLMAACHTENTSCYLSGSAPSRRGLEQTLMSVVSEKVHNVEEIERPLAQ
ALEGWVLKQAVTGLMRGGQLEQAEALCSQVLNVSPEHPEVMLSLRQVQCQRLLLAGGGTV
LPDPVLEQLQNTVMMNPTNVGAWHWLAEVFRSQGLLVQAVIAYRQSLQLASQLGLHSSQV
ASLLRLALLALGNCMAGVPDNEWTDMILEATTEVLKLGSSPMALLFQALLQYVNKMAARD
TRRVLERLAYSQDLPVTVVQVSSWYLLRHLHAKNDQDLMNVLLQHAKKNGDKRLLEFHSL
LASSS
NT seq
4698 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataaggaagtgaaaacggcactaaaaagtgccagagaggccttaaaaaacaaa
gagttcaaagacgctctgaaacactgcaaggctgttttgaaactggagaagaacaactac
aacgcgtgggtattcatcggcttggcagccagtgagctggagcaagcggatcaggcgcag
acagcctataaaaaagcggcggagctggagcccgagcagctgctggcttggcagggtttg
gcaaatctttatgagaagactgatcagtgggattttaaagttgagctacccaacatctac
cagaagcttgttgagctgtatgcaagctctgacaaaagtaaatgttacgagatgatcagt
aagctgtcagatatctatcaggctgacaaagaatatttaaagttggcaaaggtttggcgg
cagctcattcaggtgaaggaggaagaggctgtggacaagaaagagttactgcagttgtgg
cagcagatgacccaactcctctcagattgccctgatgagcaagagcgggactatgaaacg
caacagcacttaatcacagcatttgagaaggccatggttctcatggatcctgtacccgga
gagcaacacaagaaggcctcagctgattatgttaaatgcctttctaaattgccacaagaa
gagcccaaaatgatcgaggcatgtaaatccatgctgtccttttatcccaaccaaagttat
cctcttgaagtcctttgttctcactacctcaaaacaggggttcagaatgaggatgcagtc
agctgtttctcccggctccttgatctggcaccaaacagtggattaggtcacttgggtctg
ggcaccaaagcactgcaagaaggacggtttaaagatgccattaaggaccttgcgcaaggt
ttgaaaaatatgagctccagtagaggatggtgcaatctggctgaagcccagtttaaaatg
cagaaatactcagactgtgctatttcatgctcccaaggtgtgactggatgtgtttccgga
gacgaggagctgagggtcaaactgctggagatgaagctagaggctttagtcaggagtggg
ggagacactgctgctgaccaggctttagagaccttctctcagatcccagattctgagaaa
gacccagttctggtaggccttaaaggacaagcttaccttaacaagggacgagtggacgac
gctctcaaggtgtcttcagagctgctggcctctcacctgaatctgacccaggggttggtc
ctgagaggactggcccatttggctcagggacaacatcaactggtagaggagagtttcctc
caggcgatcagccagagcccaaactgtggagagtatcatttcttgctgggacgactttac
tgggacatgggagaagagacccgaaaagacagaagcaaagcccatacacatttgctcaag
gctgcaaagttggacccaaaccttgcttgtgtgttccgctaccttgggcactactacctc
caagtggcaaatgatcttgaccgctcacgaagatgctataagaaggcctttgagatggac
aacaatgatgctgagtctggagccgcctcagtggacctcagtatgaagcaggacgacatg
gacactgctttagcaatactgcagtccgtgattgagaaagccactccaggctcagccaaa
tgggcttggatgaggcgggggctgtattacctaaagatcggagcgcatcaacaagctgtg
gctgatctgcaggcagctctgagagcagatccagaggactgggtgtgttgggagtgttta
ggtgaggcctacctaaaccgccggagtttcacagccgctctgaaggcctttggaaaggcc
catcagcttcaaccctcctccatctacagtgtctaccaggcagctgctatcaaacagacc
ctgggcaagttcaaagaggccgttgcagagtacttgcagatcacggcgcagcaggactat
gtgcctgcccttaaaggtctcggggagtgccagctgtccctagctaaaagtttgatggaa
gactgcagagatgggggagccattgaccttattcagcaagccataaaaaacctcttccga
gctgtggagatgcgtccggacctgtcctgtttgtggaagctgctgggagatgcttgcact
gcggtcggcaccgtgtcgccagacgttgctcaacttttagtgccagccccactggccggc
tcagataaccagagccacacactgagccaggcccagacactcaaggttggagagaggtgt
tatgcccatgctttgaagctgatgcctgaggttcccagcctttggaacgaccttggactc
aactattaccgtcagtccagcctgtcctgcctcacagaggacggccagaactcgccatcg
ctgctcctggagaaggcacagcagtgtttaaaaaaggctatcatgatggacagtgagaac
cacagcttctggaatgccctgggagtgatttcaatgagcaaaggtcttgagaacttggct
ctggctcaacattgcctcatcaagtcaatacaagttgaagcaaacaatgttgttgcttgg
accaaccttggtaccctgtatttgaagaacgacaacatagagcttgcccacaaggccttc
aaaattgcacagtcgctggagccgctctatgtcaactgctggattggacaggcactgata
gcagagagagtcggaagctatgacaccatggatcttttcaggcacaccactgaactcagc
acgcatatggagggagtgaaaggttatgcctactgggtgtgttccaccctgctggatagg
agcaaccgagactctgaactttaccgctacaacatagtccagatgaatgccatttctgct
gctcaggtgtcgctcaccaagtacacggagaggatccagtctgacccctttgccttcatc
atgcttggttacctgaatgagcatctgcacctaaagagatcggccctaaaggcttacaaa
agagctgtggaactgctgacggccatgtcctcaaccgaggagctggcctttgctctgggc
tgctatggacgtgctttgtgcaccgcaggtctgtcagaggaggcagtgtgtgtttataat
tccactccactgcaagagctcagcgatctggctgggctggctctcgcctacagcagggca
ggactcattccagagagcatcaatgcctatgaacgtgccttggctgtggcttccactgag
aaggagaaggcttacatattgacagccctggctctgcttcagcaccggcagggtaaccaa
gactcagccaagactctgctgtttaaatgctcgatgttaaaggagccaatctccgagtct
ctgctgtgtttatgtgccctggggttagtccacagtgacgctacactagctgcagctgct
ctgaccgagttgcttaagctcggtccaggctctgtgaaggttgttgagcagcgatgcctc
ctcacctgtgccttgctcgccctgcagggcaactacagcgccgtgcaaagagaggcttcc
agagctgtacacagcaatcctggaaacccatctctatgggccctgctgtccaggctggta
ccacaataccaccccaagaaggctaatggtggcgcgatagccggtcacgttgcctgtctc
tccagtatgacccaaggaaagagggcgctgttgtacagtggcgtgaaccagctagctaac
gggagacactctggagaggacagtcacaggaatgcgctgaagacaatgcagagagctgtg
ttgctctgtcctgatgatccagcaacatgggcgggacttatggctgcctgtcacacagaa
aatacttcctgttatctttccggttctgctcccagcaggcgaggactggagcaaacactc
atgtcagtggtttctgagaaagtgcacaacgtggaggagattgagcgccctctggcccaa
gctctggaaggctgggtactaaaacaggccgtgactggtctcatgcgggggggacagctg
gagcaagctgaagccctctgttcacaggtgctgaacgtttccccggaacacccagaagtg
atgctgtcactgagacaggtgcagtgtcagcgcctcctactggccggtggtggtactgtg
ctcccagaccctgtgctggagcaactccaaaacacagtgatgatgaaccccaccaacgtt
ggggcgtggcattggctggctgaggtgtttcgtagccagggcttgctggtccaggcggtc
atcgcttacaggcagagtctgcagctggcctcgcagctcggcctgcacagcagccaggtg
gccagcctgcttcgactcgcgctgctggccctgggaaactgcatggcgggcgttccagat
aatgagtggacggacatgatattagaagccaccacagaagtcttgaagctagggtcgtct
cccatggccctcctctttcaggccctgctccagtacgtgaacaagatggctgccagggac
acaaggcgtgtgttggagaggttggcttactctcaagacctccctgtgacagtggtgcag
gtgtccagctggtacctcctcagacacctgcatgccaaaaacgaccaggatctaatgaat
gtccttttgcagcatgccaaaaagaatggagataaaagactgctagagttccattccctg
ctggcctcttcatcatga
DBGET
integrated database retrieval system
