KEGG   Gasterosteus aculeatus (three-spined stickleback): 120831375
Entry
120831375         CDS       T07457                                 
Name
(RefSeq) RNA-binding protein MEX3B-like
  KO
K15686  RNA-binding protein MEX3 [EC:2.3.2.27]
Organism
gat  Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:gat00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gat03019]
    120831375
   04121 Ubiquitin system [BR:gat04121]
    120831375
Enzymes [BR:gat01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120831375
Messenger RNA biogenesis [BR:gat03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     120831375
Ubiquitin system [BR:gat04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120831375
SSDB
Motif
Pfam: KH_1 KH_Vigilin zf-C3HC4_3 KH-I_KHDC4-BBP KH_2 zf-C3HC4 zf-RING_2 Prok-RING_4 KH_DEAH11_2nd zf-RING_4 zf-RING_5 zf-P11
Other DBs
NCBI-GeneID: 120831375
NCBI-ProteinID: XP_040052724
UniProt: A0AAQ4QRL6
LinkDB
Position
XIII:7065815..7074504
AA seq 676 aa
MPSSTSLLEADEGESEVPPPLVHAFAGMGLEEHPGTQSQTPEQVDDSLPYHHQLHQLPPV
AHFNLRGTVLDLKPLHRPPSGDEVNNITAAPEDEEPEVITAADSSFLAQAHRHQHLQSGP
LSSGMPSGMETSHIETVLLYNGDERDDGGLGGGMAMLPAGVFGESGYEAESSLLARRKSV
NTTECVAVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEQPVFVVTGRREDVAMAK
REILSAAEHFSLIRASRNKTGPLAAATGPGTPSLPGQTTIQVRVPYRVVGLVVGPKGATI
KRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRARDEIEAHIALRTGTCGGIEAPGVDNN
DFQYNGTDVSFEHSAAQAGLRDAGWLPAGASSSSPSGAGLLPVTVNGTPRVNGNINSGVK
MSSTYRNDSSSSLGSGSSSAESVYGSSNGNRGADLSPPCQFNGNNNNNNGNRGGATASFW
FGESLLPVGSEELVNLGGGGSPSGFDPLTISTAQASLPAAQPQIWSPYVDHLPPQTFDAR
QSQPGTPRLSPTFSGTEALEHPQAQRVHRGPFGSTGALDAHRFPSCSSAFSSSSESTASS
SSPPESSLLYRSGLGSAGRGPEICIHCLDNQVIAALVPCGHNLFCLDCATHICQGAEAAC
PVCQSPVTQAIQLRNM
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgccgagcagcacgtccttgctggaggccgacgagggagagtccgaggtaccgccgccg
ctagtgcacgctttcgccggcatgggcctcgaggaacaccccggcactcaaagccagacc
ccggagcaagtagatgatagcctcccttatcaccaccagctccaccagctgccccccgtc
gctcatttcaacctccgcggtaccgtcctcgacttgaagcctctacatcggccgccctcg
ggagatgaagtaaacaacataaccgctgcgcccgaggacgaggagcccgaagttataacc
gctgcagactcctcgtttctggcgcaggcccaccgccaccaacacctccaatcggggcca
ctttcctccgggatgccgtccgggatggaaacgtcccacatcgagacggtcttgttgtac
aacggggacgagcgggacgacggcgggctcggcggcggcatggccatgctaccggccggc
gtgttcggggagtcgggctacgaggccgagtcttcgctgttggctcggaggaagagcgtc
aacacgaccgagtgtgtggcggtaccgagctccgagcacgtcgcggagattgtgggcaga
cagggttgtaagattaaggcactacgagccaagaccaacacctacatcaagacaccggtg
aggggggagcagccggtctttgtcgtgaccgggcgcagggaagacgtggccatggccaag
agggagatcctgtcggcagcagagcacttctccctcatcagagcctctcgaaacaagacg
ggcccgcttgccgctgcgaccggtccagggaccccctccctacctggacagaccaccatt
caggttcgggtaccatatcgtgttgtagggctggtcgtggggcccaaaggagcaaccatc
aaacgcattcagcaacagacccacacatacattgtgacgccgagtcgcgacaaagagccc
gtgttcgaggtcaccggcatgccggagaacgtggaccgggcgagggacgagatagaggcg
cacatcgcgctgcgcacgggaacctgcggcggcatcgaggctcccggcgtcgacaacaac
gacttccagtacaacgggacggacgtcagctttgagcattctgcggcgcaggccggcttg
agggacgccgggtggcttcccgcgggcgcgtcctcgtcctcccccagcggggctggcttg
ctgccagtgaccgtcaacgggactccgcgagtaaacggcaatattaacagcggggtcaag
atgtcttccacctaccgcaacgacagctctagttccctgggaagcggctccagctcggcc
gagtccgtctacggcagcagcaacgggaaccggggggcagatttaagccccccctgtcag
tttaacggcaacaacaacaacaacaacggtaaccgtggtggcgccactgctagcttctgg
ttcggcgagagcctcctccccgttgggtccgaggagctggtcaacctgggaggcggaggc
tcgccctctggattcgacccgttaaccatctccactgcccaggcctcgctccctgccgcg
cagccacaaatctggagcccctatgtggaccacctgcccccccagacgtttgatgcccgt
caatctcagcccgggacgccccggctctctccgaccttctctggcacagaagccttggag
caccctcaggcccagcgagttcaccgagggcccttcggctcgaccggagccctcgacgct
cacaggttcccctcctgcagctcggccttctcctcctccagtgaaagcaccgcctcctct
tcctccccacccgagtcctcgctcctctatcgatcggggctcggttcagcggggagagga
ccggagatatgcatccactgtttggataaccaggtgatcgctgccttggttccctgcggc
cataacctcttctgtctagattgtgccacccacatctgccaaggtgccgaggccgcctgc
cccgtgtgccagtcaccggtcacacaggccattcagctccgcaacatgtga

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