Gasterosteus aculeatus (three-spined stickleback): 120831715
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Entry
120831715 CDS
T07457
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
gat03009
]
120831715 (ddx55)
Enzymes [BR:
gat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120831715 (ddx55)
Ribosome biogenesis [BR:
gat03009
]
Eukaryotic type
Pre-60S particles
Helicases
120831715 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
120831715
NCBI-ProteinID:
XP_040053338
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All DBs
Position
XIV:796589..801078
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AA seq
599 aa
AA seq
DB search
MNNSTEGTWDSLPTQLTEGILQTLEEIKFTHMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPIIELLLRREEKLKKMQVGALVITPTRELALQISEVMALFTSKFPQFTQILLIGG
TNPIDDVEKFKENGANIVIATPGRLEDMFRRKPDGLDLASSVRSLDVLVLDEADRLLDMG
FEASLNTILAHLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAESAVVQKTP
SRLCNYFTICRTENKFNNLVAFLRQHKQEKHLVFFSTCACVEYFGRALETLVKKVTVHAI
HGKMKNKRNKIFADFRALKSGILVCTDVMARGIDIPDVHWVLQYDPPSSASAFVHRCGRT
ARIGNHGNALVFLLPMEESYVNFLSINQKCPLQKMVLTEEVVDVLPKVKAMSLADRAMFD
RGMRAFVSFVQAYAKHECSLIFRVKDLNFSTLARGFALLRMPKMPELKGKTFPGFDGAAL
DTDTIRYKDKNREKLRQKMLAELKERPPLPKRNFIKNKSWSKQKTKTERRKKRSAKRKHE
EGSDVEDEDMKELLNDTRILKRLKKGKISEEDFEKQITTKPKNKIHGGGASGEEEAEEA
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgaataactcgacagaagggacgtgggacagtttaccgactcaactcaccgagggcatt
ttacaaacgctcgaggaaattaagttcacgcacatgacacccgtgcagtccgcgtgcatc
ccgctcttcatgagcaacaaggacgtcgctgcggaggcggtgaccggcagcgggaagacg
ctcgccttcgtcatccccatcatcgagctgctcctgaggagagaagagaagctgaagaag
atgcaggtgggcgctctggtcatcactcccaccagagaactggcccttcagatcagtgaa
gtgatggcgctcttcaccagcaagtttccacagttcacgcagattttgctgatcggcggc
accaacccgatagacgacgtggagaagtttaaggagaacggggcgaacattgtgatagcg
acgccgggccgcctggaggacatgttcaggaggaagccggacggtctggacctggcgagc
tcggtcaggagtctggacgtcctggttctggacgaggccgaccgcctgctggacatgggg
tttgaagccagtctgaacaccatcctggcccacctgcccaaacagcggcgcacgggtctg
ttctcggccactcagactcaggagctggagaagctggtgagggccggcctccggaacccg
gtgcgcatcacggtgaaggagaagggcgtggccgagtccgccgtggtgcagaagacgccg
tccaggctctgcaactacttcacgatctgcagaacagagaacaagttcaacaacctggtg
gcgtttctacggcaacacaagcaggagaagcacctggtcttcttcagcacgtgtgcgtgt
gtcgagtacttcggccgcgctctggagactctggtgaagaaggtcaccgtgcacgcgatc
cacggcaagatgaagaacaaacgcaacaagatcttcgccgacttccgggccctgaagagt
gggatcctcgtgtgcacggacgtcatggcgagagggatcgatatccccgacgtgcactgg
gtgctgcagtacgatccgcccagcagcgccagtgcgtttgtgcatcgctgtggacgtaca
gctcgcatcggtaaccacggcaacgccctcgtctttctgctgccgatggaagagtcctac
gtcaactttttgtccatcaatcagaaatgtcccctccagaagatggtcctcactgaggaa
gtggtggacgtgctgcccaaggtgaaggccatgtccctggcagaccgggccatgttcgac
cgcggcatgagggccttcgtgtccttcgtgcaggcgtacgccaaacacgagtgcagcctc
atcttccgggtcaaagatctgaacttctccaccttggcccgcggcttcgccctcctccgc
atgcccaagatgcccgagctgaaggggaaaacgttccccggcttcgacggggcggcgctg
gacacggacaccatccgctacaaggacaagaaccgcgagaagctgaggcagaagatgctg
gccgagctgaaggagaggccgccgctcccaaagaggaacttcatcaagaacaagtcctgg
tccaagcagaagaccaagacggagcgcaggaagaagaggtcggccaagaggaagcacgaa
gagggctccgacgtggaggacgaggacatgaaggagctcttaaatgacactcgaatcctc
aagaggctcaagaaggggaaaatcagcgaggaggactttgagaagcagataacgaccaaa
ccaaaaaacaaaatccacgggggcggagcctcgggcgaggaggaggcggaggaggcgtga
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