Gasterosteus aculeatus (three-spined stickleback): 120831791
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Entry
120831791 CDS
T07457
Symbol
prpf4
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120831791 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
gat03041
]
120831791 (prpf4)
Spliceosome [BR:
gat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
120831791 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WDR55
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_Aladin
PRP4
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Ge1_WD40
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_HPS5
Beta-prop_WDR41
WD40_like
Beta-prop_SPT8
Beta-prop_WDR11_1st
Beta-prop_Nup120_160
WD40_RFWD3
Motif
Other DBs
NCBI-GeneID:
120831791
NCBI-ProteinID:
XP_040053488
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All DBs
Position
XIV:360855..367748
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AA seq
507 aa
AA seq
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MSDEEDSAPASKRTRVYYGSLEEKERERLSSEGRSGDGVKAGIKAGNINISSGETLEMEE
RVSERQQDALAAFEQRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERLRSVL
SVVGPDALKKSRRDDERAKRSQDECQQTWFHEDSAYLKDARLWLAKYSLPRAMKRLEAAR
ALKEVAEATRAIRQQEQQNSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWSGLCKL
WSVPDCSLIRTLRGGRTSHVGSVVFPGEGGSLPSTNHNFSWPSWSAHGSFMLWNLESDEP
VADIEGHSDRVSRVSWHPSGRFLGTTSYDNSWRLWDLEVQEEILHQEGHSKGVHDLHFHP
DGSLAATGGLDAFGRVWDLRTGRCIVFLEGHLREIYSVHFSPNGHHLATGSGDNTCKVWE
LRNRKCLYTVPAHQNLVSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEGKV
MSVDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaggaggactctgctccggcctccaagcggactcgcgtctactacgggagt
ctggaggagaaggagcgggagcgcctcagctccgaggggaggagcggcgatggcgtgaag
gccgggatcaaggcgggaaacatcaacatctcgtcaggagagaccctggagatggaggag
cgcgtcagcgagcggcagcaggacgcgctcgccgccttcgagcagcggcgccgcgcccgt
cagatcaccgtctccacggacgacgccgaggtcaaggccggcctccgggcgctgggggag
ccaatcacgttgttcggagagggaccagctgaccggcgcgagagacttcgcagcgttctg
tctgttgtcggtccggatgctctgaagaaatccagaagagacgacgagagagccaagagg
tcccaggacgagtgccaacagacgtggttccacgaagactccgcctacctgaaggatgct
cgcctctggctggccaaatactctctgccaagggcgatgaagcgtctggaggctgcacgc
gctctcaaggaagttgccgaggcaacgagggcgatacggcagcaagagcagcaaaacagt
ctgaggaatctgaacaacttctgcagtcagatcggtgacgatcgaccaatcagcttctgc
cacttcagccccgactcaaagatgctggccaccggctcctggagtggcctctgtaagctg
tggtctgtccccgactgcagcctgattcgcacactcagaggtgggcggacttcccacgtt
ggctcggtcgtctttccgggcgaaggcgggagtcttccatcgacaaatcataacttcagc
tggccttcttggtccgcccacggttcttttatgctctggaacctggagagcgacgagccg
gtggctgacattgagggtcacagcgaccgcgtgtctcgggtgtcctggcatccctccggc
aggttcctgggaaccaccagctatgataactcgtggcgtctgtgggatctggaggttcag
gaggaaatcctccaccaggaaggtcacagcaaaggagtccatgacctccacttccacccc
gacgggtccctggctgctactggaggcctggatgcctttggcagggtgtgggaccttcgg
accggacgctgcatcgttttcctggagggacacctgagggagatttacagcgttcacttc
tcacccaacgggcatcatctggctacaggaagtggtgataacacctgtaaggtttgggag
ctgagaaacaggaagtgtttgtacacagtccccgcccaccagaacttggtgtcggctgtc
cgcttccaacctacagacggtcacttcctgttgacaggagcttacgacaacacggcgaag
gtttggagtcaccctggctggacgccgctgaagacgctcgccggccacgaggggaaggtg
atgagcgtcgacgtgtcacctgacgggaagctgatcgccaccagctcctacgacaggacc
ttcaaactgtggctgtctgagtga
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integrated database retrieval system
