Gasterosteus aculeatus (three-spined stickleback): 120831836
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Entry
120831836 CDS
T07457
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03082
ATP-dependent chromatin remodeling
gat03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120831836 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
120831836 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
gat01009
]
120831836 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120831836 (smarcb1b)
03036 Chromosome and associated proteins [BR:
gat03036
]
120831836 (smarcb1b)
Protein phosphatases and associated proteins [BR:
gat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120831836 (smarcb1b)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120831836 (smarcb1b)
SWI/SNF complex
120831836 (smarcb1b)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120831836 (smarcb1b)
PBAF complex
120831836 (smarcb1b)
SWI/SNF complex
120831836 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
Motif
Other DBs
NCBI-GeneID:
120831836
NCBI-ProteinID:
XP_040053558
UniProt:
A0AAQ4RCA0
LinkDB
All DBs
Position
XIV:complement(14516877..14523234)
Genome browser
AA seq
368 aa
AA seq
DB search
MQLALSKTFGQKPVKFQLEQDGDFFMVGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERK
KIVASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRSSQWVPTLPN
SSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENAAQVEALVPIRLDMEIDG
QKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILEEQ
ADQRVIIKLNIHVGNISLVDQFEWDMSERENSPESFALKLCSDLGLGGEFVTTIAYSIRG
QLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTRRMRR
LANTAPSW
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgcagttggctctgagtaaaacgtttggccagaaaccagttaaatttcaactagagcaa
gatggagactttttcatggttgggtcagaggttggaaactacctgcgtatgttcagaggc
tctctgtacaaacgctacccgtctttatggaggagactggcctcggtggaggagaggaag
aagatcgtcgcgtcatcacatgccaccagtgttactttgctgaaggcgtcagaatgtgaa
gagatcttcgagggtaatgatgagaaatacaaagcggtgtccatcagcactgagccccct
gcttacctcagggagcagaaagctaagcggagcagtcagtgggtccccacgctgcccaac
agctcccaccacctggacgctgtgccgtgctccaccaccatcaaccgcaaccgaatgggc
cgcgacaagaaaaggaccttccccctgtgcttcgatgaccacgaccctgcagtgatccat
gagaacgccgcccaggtggaggcgctggttcccattcgactagacatggagatcgacgga
cagaagctgcgagacgccttcacgtggaacatgaatgagaaactgatgaccccagagatg
ttcgcggagattctatgtgatgacctggacctgaatcctctggccttcgtccccgccatt
gcctcagccattcgtcagcagattgagtcctaccccactgacagcatcctggaggagcag
gcggaccagagagtcatcatcaagctgaacatccatgtggggaacatttccctggtggac
cagtttgagtgggacatgtcagagagggagaactctccagagtcctttgcactgaagcta
tgctctgatctcgggctgggtggagaattcgtcactacgatcgcctacagcattcgcggt
cagctgagctggcaccagaggacctacgccttcagtgagaacccactcccgacagtggag
atcgccatacgcaacacgggtgatgcagatcaatggtgccccctgctggagaccctcaca
gacgctgaaatggagaagaagatccgagaccaggaccggaacacaaggcgcatgagaaga
ctggccaacaccgctccgtcctggtag
DBGET
integrated database retrieval system
