Gasterosteus aculeatus (three-spined stickleback): 120831879
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Entry
120831879 CDS
T07457
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gat03021
]
120831879 (chd1)
03036 Chromosome and associated proteins [BR:
gat03036
]
120831879 (chd1)
Transcription machinery [BR:
gat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120831879 (chd1)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
120831879 (chd1)
SLIK complex
120831879 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CHD1-like_C
CDH1_2_SANT_HL1
Helicase_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
120831879
NCBI-ProteinID:
XP_040053669
LinkDB
All DBs
Position
14:13719584..13743050
Genome browser
AA seq
1794 aa
AA seq
DB search
MAGRSEDESVSNSSGDSSNSDDESGSGSGSASGSASGSSSSSSSSSSQSGSSDSGSGSDS
GSQSDSDTEKSKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQQHQQQQQQKRQS
SSNTGSDEDSSSSDGSDSSSGSKRRRNSASSDSGSGSGSASGSGSDSSAEDNSEETASDY
EPSHKIKSRKPPTKMNYRNGKKSSSQKKKSQKCSSSEDEDDNYKKAASAGQRRQSTVNVS
YKEDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDSRIGRKRATGSVTTVYAVEADG
DPNATFNTNKEPGEIQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKDQEKKR
WLKAASPEDIEYLNCQQELMDDLHSQYQLVERILGHSNQKSVAGYPDYLCKWQGLPYSEC
SWEDGALIGRKFQKCIDDYMSRNQSKTIPSRDCKVLKQRPRFVPMKKQPTYIGGDGLELR
DYQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFNDHQLYGPFLLVVPLSTL
TSWQREIQLWAPQMNFVVYLGDISSRNMIRTHEWIHVHSKRLKFNILLTTYEILLKDKSF
LGNVNWAFIGVDEAHRLKNDDSLLYKTMMDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFHSWELFEEAHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQ
KQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFLNRAEALQQ
LIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSRQFLFQRLDGSIKGEM
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKRQVNIYRLVTKSSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNK
EELSSILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVA
NFSMMDDEEIDIDSERSHRSWDSIIPEEQRRRMEEEERQKELEEIYLLPRMRNCAKQISF
NAGSGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFG
GPLERLDAIARDAELVDKSEHDLKRLAETVHNGCLRTLRENPCGPEKTSGGRRGKVKGPT
FRISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIEWGKEDDSSL
LIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKRE
AQKQAGTANSRKRKPRSKRSKSLKPTKTDEVMKSTSSDPPSDKRSDDEEDIEEEKEVALV
KAPSRRNRADRVVEKEDGEDEDEEHEQEEVSSSGERELLEKEGKREIKEESWDIKDTKEP
KEKKETKPLEVVHKQEESMEKIEIKAEVRERTKKASDVPVHITATGENVPVSEESEELDQ
KTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQI
KQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINIHSFKHADIERL
KDNSHQDDSSRDSYSSDRHPPSSRYHESSSSSSKERHSSESHRKTAGDSRKRPYSSFSNG
KDHRDHYRPDSRERDRERQDRFYNDSKHRKLEEFRSSRDHRLDVKDHSHSEHRSSYRYHS
DWQSEQRASASGPRSPRDQRSPYDSRSPMGHRSPFDYSSDHKSTPEQIWSSRKT
NT seq
5385 nt
NT seq
+upstream
nt +downstream
nt
atggccggacgcagtgaggatgaaagtgtaagcaacagcagtggagattcaagtaattct
gatgatgaatctggttctggatcgggctcagcctcaggctctgcttcaggctccagttcc
agctcctccagcagcagcagccaatcggggagcagtgattcaggtagtggctccgactcc
ggcagccagtcagattctgacacagagaaatccaaggagaagatggaaccgccaaataag
tcaaacatcgatggagctgagttctggaagtccaacccaagtatcctagcagtgcaaaga
tcagctatgctcagaaaacaacaacaacatcaacaacagcagcagcagaagagacaaagc
tcctcaaatactggatctgatgaggactcttcgagtagcgatgggtcagactcatcaagt
ggatcgaaaagaagaagaaattcagcctcctcggactctggatcgggctctggatctgca
agtggttctggatcagactcatcagcggaggacaacagtgaagaaaccgcatcggactat
gagcctagtcacaaaatcaaaagcagaaagcctccaacaaagatgaattatcggaatggg
aagaaaagcagcagccaaaagaagaaatcccagaagtgttcttcctctgaggatgaggat
gataactacaagaaggcagcgtctgcagggcaacgtaggcagtccacagttaacgtcagc
tacaaggaagacgaggaactgaagaccgattcggacgacctcgtggaagttctgggtgaa
gacgtcccgcaacctgaggaagacgagtttgaaacactggagagagtgatggacagcagg
ataggaaggaaaagggcaacaggaagtgtaactactgtatacgctgtggaagcagatggt
gaccccaatgccaccttcaacaccaacaaagagcctggtgagatccagtatttgataaag
tggaagaactgggcccatatccacaacacttgggagacagaggagacgctgaagttacag
aatgtcaagggcatgaagaaactggataattttaagaagaaggaccaggagaaaaaaaga
tggttaaaggcggcttcaccagaggatatagagtatttgaattgtcagcaagaattgatg
gatgacctccactctcagtaccagcttgtagagcgaatcttagggcattcaaaccagaag
tcagtggctggttacccagactatctatgcaagtggcagggtttaccatactccgaatgt
agctgggaagacggcgctctgattggcagaaagttccagaaatgcattgacgactacatg
agcagaaaccagtcaaagaccattccatctagagactgcaaggtgctcaaacagagaccc
aggtttgtgcctatgaagaagcagccaacttacataggaggggatggattggagctcaga
gactaccagttggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgc
attcttgctgatgagatgggtttagggaagaccatccagacaatctccttcttgaactac
ctgttcaatgatcatcaactatatggacccttcttgctggttgtgcccctctctacactc
acctcctggcagagagaaatccagctgtgggcccctcagatgaattttgtggtctatctg
ggagacatcagcagcaggaatatgatcaggacacacgagtggatccatgtccatagcaag
agactgaaatttaacatccttctcacaacgtatgagattcttctcaaagacaagtcgttt
ttgggcaacgtcaactgggccttcattggagtggatgaggcgcaccgactgaagaatgat
gactccctcctctacaagaccatgatggacttcaagtccaatcacaggcttctgatcaca
ggaacgccactgcaaaactccctgaaggagctctggtccctgctgcacttcattatgcct
gagaagtttcactcttgggagctgtttgaggaggcgcacggtaaaggcagagactcaggc
tacacaagcttgcataaagagctggaaccctttttactgcgcagggtgaagaaggatgtg
gagaaatctcttcctgccaaagtggagcagatcctccgagtggagatgagtgctatccag
aaacagtattacaaatggatcctgaccaggaactataaggctctgagtaaaggtaccaaa
ggcagcacgtcaggcttcctgaacatcatgatggagcttaagaagtgctgtaaccactgt
tacctcattaagcccccagaggacaacgagttcctgaacagagctgaagccttacagcaa
ctgatccgcagcagtgggaagctggttctgttggacaagctgctggtgcgtttgaaggag
cgaggccaccgagttctcatcttctcccagatggtacggatgctggatatcctggctgat
tacctgaagagcagacagttcctcttccagagattagatggctcaatcaaaggcgagatg
agaaagcaggcgttggatcatttcaatgctgagggctcagaggatttttgcttcttgttg
tcgacgcgtgctggtggtctgggtatcaatctggcgtcagctgacacagtagttatcttt
gactcggactggaacccccagaatgatctccaggcccaggccagagcccacaggatcgga
cagaaacgacaggtcaatatctaccgcctggtgacgaagagctcagtggaggaggaaatc
attgagagggcaaaaaagaaaatggtgctagaccacctggtcatccagaggatggacacg
acagggaaaactgtcctccacaccggcgctgctccctccagttcagcaccattcaacaag
gaggagctgtcttccattctgaagtttggtgcggaggagcttttcaaagagccagagggt
gaggagcaggagcctcaggaaatggacatcgacgagatcctcaaaagagcagagaccaga
gaaaatgatcctggaccctccactgtgggagaagaactgctttcccagttcaaggtggcc
aacttctccatgatggacgatgaggaaatagacattgactctgagcgtagtcatcggagt
tgggacagcatcattcctgaggaacagaggaggaggatggaggaggaagagcgacagaag
gaattagaggaaatctacctgctgcctcgcatgcgaaattgtgccaaacagataagcttc
aacgccggttcgggccggcagagcaggaacaggaggtattctgggtctgacagcgactcc
ccttcagaccggaaaaggccaaagaaacgaggacggccccgaaccatccctcgagaaaat
atcaagggctttagcgacgctgagattcggaggtttgtcaagagttataaaaagtttggg
gggccactggagaggttggatgctattgctcgggatgctgagcttgtggataagtctgaa
catgatctgaaacgcttagcagagacggttcacaatggctgtcttagaacactacgagaa
aacccatgtggaccagagaagacttcaggagggagaagagggaaggtgaagggccctacg
ttcaggatctctggagtccaggtgaatgccaagcttgttatctcccacgaggaagagttg
gctccactccacaaagccattcccgctgacccggaggagagaaaaaagtatatgattcca
tgccactcaaaggcagcacactttgacattgagtgggggaaggaggacgactccagcctc
ctcataggaatctatgagtacggatacggcagctgggagatgatcaagatggacccagac
ctcaatctcacacacaagcttctgccagatgaccctgacaagaagccacaggccaaacag
ctgcagaccagagcagactacctcatcaagctgctaagcaaggacctggccaaaagagaa
gctcagaaacaagcagggacggctaattcgcggaagaggaaaccaagaagtaaaaggagc
aaaagtctaaagcctacaaagaccgacgaagtgatgaagagcacgtcctcagatcctcca
tccgacaagaggtcggacgatgaggaggacattgaggaggaaaaggaggtggcactggtg
aaggcgccaagcagacggaaccgagcagaccgggtggtggagaaggaggacggggaggac
gaagatgaggagcatgaacaggaagaagtgtcttcatcaggagaaagggagctgctagaa
aaagaaggcaaaagagaaattaaggaggaaagttgggacattaaagacacaaaggagcca
aaagagaaaaaagaaacaaagcccctggaagtggttcataaacaagaggagagcatggaa
aagatcgaaataaaggcagaggtacgagaacgaacaaagaaagcctccgatgtgccagtt
catattacagcaactggggagaatgtgccggtatctgaggagtctgaggaactggaccag
aagaccttcagcgtgtgcaaagagaggatgcggccggtgaaagcggccctcaagcagctg
gaccgacccgagaaagggctgtcggagcgcgagcagcttgaacatacaagacagtgcctc
attaagatcggagaccacatcactgagtgtctgaaggagtattccaaccctgagcagatt
aaacagtggaggaaaaacctgtggatatttgtttctaaattcactgagtttgacgccagg
aaactgcataaactgtataagcacgcaatcaagaaacgacaagagaacgcccaggcgatg
gagcagaacactaggagcataaacatccacagctttaagcatgcagatattgaaaggctg
aaagacaactcgcaccaggacgacagcagcagggacagctacagctcagacagacatccg
ccgtcgagtcgctaccacgagagcagcagcagcagcagtaaggagagacacagctccgag
tcccacaggaagaccgcaggagactccaggaagagaccgtactcctccttcagcaacggc
aaagaccaccgagaccactacagaccagacagcagggagcgggaccgagagagacaggac
aggttctacaatgacagtaagcacaggaagctggaggagttccgctccagcagagaccac
cgactggacgtgaaggatcattcccactcggagcaccgctcgtcctaccgctatcactca
gactggcagagcgagcaacgggcctcagccagcgggccccgctccccccgggaccagcgc
tcgccctacgactcgcgctcgcccatggggcaccgctctccctttgactactcgtcagat
cacaagagcacaccggagcagatctggagcagccgcaagacataa
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integrated database retrieval system
