Gasterosteus aculeatus (three-spined stickleback): 120831917
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Entry
120831917 CDS
T07457
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120831917 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
gat04990
]
120831917 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
gat04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
120831917 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
120831917
NCBI-ProteinID:
XP_040053753
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Position
XIV:complement(6671878..6698932)
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AA seq
646 aa
AA seq
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MRKFQFRSVQLTSRLRRDGLKSRFSLRSGPGFTTQGKIMSSSYGVSLAGPAPWGFRLQGG
KDFCMPLTISRLTDGGKAARAKMSVGDVVLSINGISTNGMNHLEAQNKIKAVTGNLSLTL
QRPSSATKDGAPKVEPQEIIKPVPITHPAPSTAYTKPPGQLAPTYTKTARPFGGGDGGAA
TAPSPAAPAIPSQSSAFKPAAPSQPPEPPFLLKSSLPAADSPPANSAPRAGPARHAFTSP
SASSSSSNSSSPARVTTPSCHPNVPQPSVYNTPINLYSNTNACEAVIGQRRGLLESQGLS
EPFNGKPNAQPVDHASPLSDASKKRLIEDTEDWHPRTGTSQSRSFRMLAQLTGTENEAAP
ENSAKNEAVDRTAPALHTSPAAKTFSKSAASPRNNAVAAPMLKSSPALNAPRGSPGTGVP
KVGAAPSFGKVTNPPPKGPDRPVPQPHPQDLNSVVQRAEHIPAGTRTPMCNKCNTVIRGP
FLVAMGMSWHPEEFNCAHCHSSLAERGFVEERGQVYCERCYEQFFAPTCARCQQKVLGEV
MNALKQTWHVSCFVCVACKQPIRGNTFHMEDGQPYCEKDYYQLFGASCHGCDFPIEAGDK
FLDALGFTWHDTCFVCAVCSASLQGQAFFSKKDKALCKKHAHAVNI
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcggaagttccagttccgttctgtccagttgacttcgaggctgagaagagacggacta
aagtcacgcttctctctgcgcagcggacccggcttcaccacacaaggtaaaatcatgagc
agcagctacggtgtctccctcgctggccccgccccctggggcttcagactgcaaggcggg
aaggacttctgcatgcccctcaccatctcacggctgactgatggaggcaaagcagccaga
gccaagatgagtgttggagacgtcgtcctgtccattaacggcatttccaccaatggcatg
aatcacctggaggcccagaacaagatcaaggccgtcacaggcaacctgagcctcacccta
cagcgaccctccagtgccactaaagatggagcacctaaggtcgaacctcaggaaatcatt
aagcctgtccccatcactcaccctgccccgagcaccgcatacaccaagccgccgggccag
ctcgctcccacgtacaccaagaccgcccggccctttggggggggggacggcggcgcggcc
acggctccctccccggctgcccccgccattccctcacagtcctccgctttcaagcccgcc
gctccttcccaaccgccggagcccccgttcctgctcaagtcgagcctccccgccgccgac
tcccctccggccaactcggctcccagggccggccccgctcgccacgccttcacttccccg
tccgcctcttcctcttcgtccaactcctcctcgccagccagagtgacgaccccctcctgc
caccccaatgtcccacagccctccgtctataacaccccgatcaacctctactccaacacc
aacgcctgcgaggcggtcattggccagagacgcggccttttggagagccaagggctgtcg
gagcccttcaatgggaagcccaatgcgcagcccgtggatcatgcgtccccactgagcgac
gccagcaagaagcggctgattgaggacacggaggactggcacccgcgaaccggcacctcc
cagtcccgctccttccggatgctcgctcagctcaccggcaccgaaaacgaggccgctccg
gagaacagtgcgaagaacgaggcagttgacagaaccgcgcccgccctgcacacctcgcct
gcggcgaaaacattttccaaatccgcagcgtcaccgaggaacaacgcggtcgccgctccc
atgttgaagagctcaccggccctgaacgcacctcggggttcgccaggtacaggtgttcct
aaggttggagccgctccttcatttggcaaagttaccaacccgcctccgaaaggtcccgat
cgtcccgtcccgcagccgcatccgcaggacctcaactctgtggtgcagcgggccgagcac
atccccgccgggacgcgcaccccgatgtgcaacaagtgcaacaccgtcatcaggggccca
ttccttgtggccatgggcatgtcgtggcaccccgaggaattcaactgcgctcactgccac
tcctccctggcagagcgtggttttgtggaggagaggggccaagtgtactgcgaacgttgc
tacgagcagttcttcgctcccacctgcgcccgctgccagcagaaggttctgggagaggtc
atgaatgccctgaaacagacctggcatgtgtcctgtttcgtctgtgttgcctgcaaacag
ccaatcaggggcaacacgttccacatggaggatggacagccgtactgtgaaaaagactac
taccagctatttggggccagttgccacggctgcgacttccccattgaggcaggggacaag
ttcctggacgcactgggattcacctggcatgacacctgcttcgtgtgcgcggtgtgctct
gccagcctgcaaggtcaggcgttcttctccaaaaaagacaaggctttgtgcaagaaacat
gcccacgctgtcaatatctga
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