Gasterosteus aculeatus (three-spined stickleback): 120832195
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Entry
120832195 CDS
T07457
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03320
PPAR signaling pathway
gat04148
Efferocytosis
gat04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120832195 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
120832195 (rxraa)
03320 PPAR signaling pathway
120832195 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120832195 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
gat03310
]
120832195 (rxraa)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
120832195 (rxraa)
Nuclear receptors [BR:
gat03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
120832195 (rxraa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
120832195
NCBI-ProteinID:
XP_040054223
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Position
XIV:complement(12419574..12495227)
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AA seq
504 aa
AA seq
DB search
METKPFLSLGFLKPQCSLAHPMQRGRSGEACSCFTGMCALHQRRLSSDSSGHLSSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLGSPFSVISSPMGPHSMSSPGMGY
GPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTVLSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKNCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKERNESEVESSSCANEDMPVEKILEAEQAVEPKTETYIETNLGVPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
SIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcactggggttcctgaagccccagtgctcgttggcccat
cccatgcagcgaggccgctcaggcgaggcttgctcctgcttcactggcatgtgcgccctc
catcagcgccgcctgtcctcagactcgtcgggccacttgtcctcctcgcccctgggctcc
cccacgtcccaccgggggatgcacccgtctctgctcagcccgacctccatggggccctcg
ggctccctccactcccccatcagcacgctgagttcgcccatgaacggcctcggctcgccc
ttctccgtcatcagctcgcctatgggtccccactccatgagctcccccggcatggggtac
ggccccagcgtcagcccccagatgttccagctgaactccccgatgaactcggtcagcagc
acggaggacatcaagcccccgctgggcctcaacggcgtgatgaaggtgcccgcccagccc
tctggcacggtcctgtcgctcaccaaacacatctgcgccatctgcggcgaccgatcctca
ggtaaacactacggggtttacagctgcgagggctgcaaagggtttttcaagcggacggta
cgcaaagacctcacctacacctgccgcgacaacaagaactgtgtcatcgacaagcgccag
aggaaccgctgccagtactgccgctaccaaaagtgtttagccatgggcatgaagagagaa
gttttgttacatgcagccgttcaggaggagcgccagcgagccaaggagagaaacgagagc
gaggtagagtcctccagctgcgccaacgaggacatgcccgtggagaagattctggaggcc
gagcaggcggtggaacccaaaacggagacctacatcgagaccaacctcggcgtgccatcc
aattcgcctaacgacccggtgacaaatatctgtcaggcggctgacaagcagctcttcacc
ctggtggagtgggccaagaggatcccccacttctctgagctgccactggacgaccaggtc
atccttctacgagcaggctggaacgaacttctcatcgcgtcgttttcgcaccgctcgata
tcgatcaaagacgggatcctgctggcgaccgggctgcacgtccaccgcaacagcgcccac
agcgccggggtgggggccatctttgacagagtgctcacagagctggtgtcaaagatgagg
gacatgcagatggataagacggagttggggtgccttcgagcgatagtccttttcaaccca
gactccaaagggttgtccaatccgggtgaggtagaagctctgagagagaaggtgtacgcg
tctttagaggcctactgcaaacagaagtaccccgaccagcctggcaggtttgccaaactg
ttgctgcggttaccggcgctgcgctccatcggcctcaagtgtctggagcacttgttcttc
ttcaagctcatcggggacacgcccatcgacaccttcctcatggagatgctagaagccccg
catcaaatgacatag
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