Gasterosteus aculeatus (three-spined stickleback): 120832212
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Entry
120832212 CDS
T07457
Symbol
rc3h2
Name
(RefSeq) LOW QUALITY PROTEIN: roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120832212 (rc3h2)
04121 Ubiquitin system [BR:
gat04121
]
120832212 (rc3h2)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120832212 (rc3h2)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120832212 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
zf-RING_4
zf-C3HC4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
120832212
NCBI-ProteinID:
XP_040054257
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All DBs
Position
14:7869705..7889370
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AA seq
1139 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQQVSLSSAAEVENYEACKVCVEELAVYLKPISGAKGVAA
LNPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANL
DHNADAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDAPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSSSVGRPFPLAPGVMGKTFTMEGSVHTDVCT
EMGPGLKSNGENTDSPTEAVSDLTHPQLISRGADMMEDTSRAAPNVSNAANGFNGMSTRN
TSGSTEQKPVSPPRTPVSHSSASSPLTTVGRGDGGAPTPKHGQFIVRAPHPSQASELYYQ
ESHSHAYDTPHYQPACSYYQSTLHPPHKPCMARFLRSSNVPESSLPPSVGPLSSSYAGDP
QAPHPTSSSSSGYPPRDRMGAPAFHHHHPGQPQYGPLTSAHGVYAPLYDSRRVWRPQLYH
REDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSAAEHRAGLNRDYGRVPLGYEDLFR
RKQEQWAHHHHHHHNANRPSQSSPVFTIDFATEHVESTGGQCVGCRFRGEESLAHYSPWS
CGSIGTCLSPFEPETLAHASAQSCSEHSELDGDGGGGGGVSSVGKRWLHSLDHYRRLKDE
DPIIPFSEGPIISKWGAISRASRTGYHTTEPIQARACQGSAGTTPISFKDYSHHLDHSDY
RWSPRGSDSSSHSSFLESEQLHCRRTSLSSAEKTASDRQAPASVAYSRDSRDRAGSEPDP
ERDIELELCAFDLEDSDHHEIKSQESLDLAAPQSQDASHLLPPPXSPPVEEYPHTEGPLT
DKMDAHLLKKMAFRRSVSPAGGQGVGRLVLRTGPPRPGGDTSTRACPEAPGTEMLLSGS
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtgcaggcggcccagtggacggagttcctgtcctgtcccatctgctacaatgaa
tttgacagcagcggccaccagcccatcagcctgggctgctcccacacggtgtgtaagacc
tgcctacacaaactgcaccgcaaggcctgccccttcgatcagacgccaatcagcaccgac
atcgacctgctgccggtcaactgtgccctgctgcagctggtcggagctcaggtcccggac
gtgcaacaggtgagcctgagcagcgcagcagaagtcgagaactacgaggcgtgcaaggtg
tgcgtggaagagctggctgtctacctaaaacccatcagcggagcgaaaggcgtggcggct
ctgaatcccagcgtgctcagtcggccaatgcagaggaagctggtgaccttggtgaactgc
cagctggtggaggaagagggccgcgtgcgggcggtgcgggcgggccgctcgctgggggaa
cggaccgtaaccgagctcatcctgcagcaccagaacccccagcagctctctgccaacctg
tgggcagcggtgagggcgcggggctgccagttcctgggacccgctatgcaagaagatgct
ctgaagctggttttactggctctggaggacggctcagctttgtccaggaaggtgttagtt
ttgttcgtggtccaaaagctcgaggctcggttcccccaggcctccaaaaccagcataggg
cacgtggtgcagcttctctacagggcctcctgcttcaaggtcaccaagcgggatgaagac
tcctcgctgatgcagctgaaagaagagtttcgaacgtatgaggctctccggagggaacat
gatgctcagatcgtccacatcgccatggaggcgggcctgcggatctcccccgagcagtgg
tcttctctgttgtacggagacctggtccacaagtcacatatgcagtccatcattgacaag
ttgcagtctccagagtcgttcgcaaagagcgtccaggagctgacgattgtcctgcagagg
acgggagacccggccaacctcacgagcctgaggccacatcttgagctgctggccaactta
gaccacaacgcagatgccccggcgccgtcatgggaggagctggaaagcgtgatgctggct
gtgaagttggtggttcatggactcgtggaatttatacagaacttcagcaagaagagccac
gacgctccgcagcctcaggccaacagcaagtacaagaccagcatgtgtcgagatcttcgt
cagcaaggaggctgtccgagaggaaccaactgtacctttgcacacacacaggatgagctt
gagaagtttagactgagaaacaagaagagcagcagcgtgggccggccgttcccgttagcg
ccgggggttatgggtaaaaccttcactatggagggcagcgtccacacagacgtgtgtaca
gaaatggggccggggctcaaaagcaacggggagaacacagactccccgacagaggcagtg
tccgacctgactcacccccaactgatctccagaggggccgacatgatggaggacacgagt
agagcggcgccgaatgtatccaatgcggccaacggattcaacggcatgtcgacccgaaac
acatcggggtcaactgaacagaagcccgtctcccctcccaggacaccagtcagccactct
tcagcgtcatctcccttgacaacagtcgggcggggtgatgggggcgctcctacgcccaaa
catggtcagttcatagtgcgtgcaccacatccctctcaggcgtcagagctgtactatcag
gagtcccactcccatgcatacgacacgccccactatcagccagcctgttcctactaccaa
tccactcttcaccctcctcacaaaccctgcatggctcgcttccttcgatcctccaacgtc
ccagaatcctctctgccgccctccgttggccctctgtcgtcttcctacgccggtgaccct
caggcgccccaccccacttcctcctcttcgtccgggtacccgcccagggatcggatggga
gctcctgccttccatcaccaccacccggggcagcctcaatacggccctctgacctctgca
cacggcgtttacgcgccgctctacgacagcaggagagtatggaggcctcagctgtaccac
agagaggatgccaggagtaactcactgcctccggaggtgctgcattcctccgtctaccag
cctccactcagggagagattcaactctctagacagcaactactgctctgcagctgaacac
cgcgcaggcctaaacagggattatggccgcgttcctctcggctacgaggatctgttcaga
aggaagcaggagcagtgggctcatcatcaccaccaccatcataacgccaacaggccctcc
cagtcctcccccgtcttcaccatcgattttgcaaccgagcatgtggagagcaccggaggc
cagtgtgtggggtgcaggttcagaggtgaggaaagcttagcgcactactctccgtggtcc
tgcgggtccatcggcacgtgtctcagccccttcgagcccgaaacgctcgcacacgcctca
gctcagtcctgctcagagcactcggagttggatggcgacgggggcgggggaggtggcgtc
agtagtgtcgggaagcggtggctgcattcgctggatcattaccggcgcttgaaggacgag
gatcccatcattcccttcagcgaggggcccatcatctccaagtggggggccatatccagg
gcatctcgcacgggctaccacaccaccgagcccatccaagccagggcctgccagggcagc
gccggcaccacccccatcagcttcaaagattacagccaccacttggatcacagcgactac
aggtggagccccagagggtcagactcctccagccactccagcttcctcgagagtgagcag
cttcactgccgccggacttcgttgagcagcgcggagaaaacggcgtctgatcggcaagct
cccgcgtctgtcgcctacagccgggacagtcgggaccgggccggaagcgaaccggaccct
gagcgggacattgagctcgaactgtgcgcatttgacttggaggattcagaccaccacgag
atcaagtctcaggagtctttagacctggccgcaccacagtctcaggacgcttcccacctg
ctcccccctcccnnctcccctccagtggaggagtatccacacacagagggtcctctgaca
gacaagatggacgctcacctgctgaagaagatggccttcaggaggtctgtgtctcccgca
ggaggtcagggtgtcggcaggcttgtgctgcgtaccggacctccgcgaccggggggggac
acttccacgcgggcttgtccggaagcgcccgggaccgaaatgttgctcagcggaagctaa
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