Gasterosteus aculeatus (three-spined stickleback): 120832458
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Entry
120832458 CDS
T07457
Symbol
srrm1
Name
(RefSeq) LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03013
Nucleocytoplasmic transport
gat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120832458 (srrm1)
03015 mRNA surveillance pathway
120832458 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120832458 (srrm1)
03041 Spliceosome [BR:
gat03041
]
120832458 (srrm1)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120832458 (srrm1)
Spliceosome [BR:
gat03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
120832458 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
120832458
NCBI-ProteinID:
XP_040054665
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All DBs
Position
15:4473214..4482975
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AA seq
854 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLEEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDDDKKEKELRERAQSKSPRRRKTRSPSPRRRSP
VKRERKRSASRSPRRKASPVVSSSPPPPLMQLPTKPLEQLVESETLDRALPEPVAQETPS
TGDTVVEVVNPDPVTEVKEASPEKSLKKEERPRSREREKDIRRERPHHRSHSHTRRRRSR
SRSFSPRRRPSPRRRMSPRRRSPPRRGPTNSRNRHRRSPVRRRRSRSASSSGSSSSNSRS
PKKAMKRISTTPPRKPVHHPNNPVSPAGKDRRSQSPRARRGRGSASPARSSGLKRKPGGR
ADSPSDNAKPRASEGSESDDDKNEKGATADSVQQRRQYRRQNRQTSSDTGSSSSEDEGPK
RPTAGPVARNGDIRRRRSRTPSPRRRHRDGSPRKRRSPSPGRRRRTPSPPRRRRSPSPPR
RRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRKLSGSPMKRPSPGAKRRVSRSPKR
RSSLAPRRRTPPSSSPSRNRRSPMLPLVRPGRDNRSPVASRLSPSLANGGRGARGSXQSS
ERFDTSGSSPSNQRRQQSLHTGASPXRRVSRTPEPRNNQRPSPSPQPLRRAPSRSVSPQP
AALKRPAPASASPSPSRSASGSPPPAKKASSGSGSQSPNKNSDVDASGKKKKKKKEKKHK
KEKKHKKHKKHKKEKSGAPVAGDGHENHGGEEDGESRKESDSEVDDSLDDLEKHLREKAL
RSMRKAQLSPSQMS
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggattcttccgcggtacaagtgcggagcaagacaaccgtttcagcaacaag
cagaagaagctgctgaagcagctgaaatttgcagaatgtctcgacaagaaggtggacatg
accaaagttaacctagaagtcatcaaaccgtggattactcagcgagtcacagagattctg
gggttcgaggatgacgtcgtcatagagtttatatttaaccaacttgaagagaagcacccg
gatagcaagatgatgcagatcaacctgactggcttcctgaacgggaagaatgcccgggag
ttcatgagggacctgtggccgctgctgctgagtgcccaggagaacattgccggcatcccg
tctgcttttcttgaacagaagaaggaggaaatcaaacagcgacagattgaacaggagaaa
ctagcttcgctgaagaaggttgatgatgataagaaggaaaaggaactccgagagagggct
cagtccaaaagcccaaggaggaggaagacccggtcaccgtccccccgtcggaggtcaccg
gtgaagcgggaaaggaaacgtagcgcctctcgctccccaagacgcaaagccagtccagtt
gttagcagttcaccacctccacctctgatgcagctgccaacaaaaccgctggagcagctg
gtagagtcagaaacattagacagagccctgccagaaccagtcgcccaagaaactccttct
actggcgacacagttgtggaggtggtgaatccagacccagtgactgaagtcaaagaagcc
tcaccagagaagagcctgaagaaggaggagaggcccaggtctcgggagagagagaaggac
atcaggagggaaagacctcaccaccgctctcattcccacactcgcaggcggcgctcccgt
tctcgatctttctccccacgtagaagaccgagtcccaggaggaggatgtctcctcgtcga
aggagcccccccagacgtggccccaccaactccagaaacagacatagacgctcccctgtc
cgcaggaggcgctctcgctctgcttcgtcctccggcagcagctcctccaactcccgctcg
cctaaaaaagctatgaaaagaatatctaccacgccgccccgaaagccggtgcaccatccc
aacaacccagtcagccccgcggggaaggacaggcggtcccagtctccacgggcccgcagg
ggccgcggctccgcctctccagccagatcatccggtttaaagagaaaaccaggaggaagg
gcggattctccatctgataatgccaagcctagagcttctgaagggtctgagtccgatgac
gataaaaatgagaagggcgccactgcagattcggtgcagcagcgacgtcagtatcgcagg
cagaatcgacagacttcttcagacactgggtcttcctcttccgaagacgagggacccaag
aggccaacggcagggccagtggccagaaacggagacatcagaaggagacgcagccgtacg
ccgtccccacggaggcgacacagagatggctctccaaggaaaagacgttctccatctcct
ggacgcagacggcgcacaccgtctcccccacgacgccgcagatctccgtctccccctaga
agaaggtctccttctccgcctccccgtcgtcgttctccatcccccaggcggtattctccc
cctatccagcgccgctacagcccctcacccctgcctccacagaagcggaagctgtctggc
tccccgatgaaacgcccgtctccgggggccaagcggcgcgtctccaggtcgcccaagcgc
agaagctctctcgctccgaggagacgcacccctccttcctcgtctccgtccaggaaccgg
aggagccccatgttgcctctcgtgagaccgggcagggacaaccgatcccccgtggccagc
cgcctctccccgtcgctcgccaacggcggccgcggcgcccggggttctnnccagtcctcc
gagcgcttcgacacctctggttcgtctccatctaaccagcgaaggcagcagtctcttcac
acgggggcaagcccanntcgcagagtgtcccgcaccccggagccccgcaacaaccagaga
ccatcaccaagtccccagcctctgaggagagccccctccaggtccgtttccccccagcca
gcagctctgaaacgtccagcccctgcatctgcctccccctcgccgtcccgctcagccagc
ggttctccaccaccggccaagaaagccagcagtggttccggcagtcaatccccaaacaag
aattcagatgttgacgccagcggaaagaaaaagaagaagaagaaggaaaagaagcacaag
aaggagaagaaacacaagaagcacaagaagcacaagaaggagaagagcggcgcccccgtt
gctggagacggacatgaaaaccacgggggggaggaggacggagagtcaagaaaggaatca
gacagtgaagtagatgacagcttggatgatctggagaaacacctcagagaaaaggccctc
cgctccatgaggaaggcccagttgtctccgtcacagatgtcctga
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