Gasterosteus aculeatus (three-spined stickleback): 120832703
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Entry
120832703 CDS
T07457
Symbol
pnn
Name
(RefSeq) LOW QUALITY PROTEIN: pinin
KO
K13114
pinin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03013
Nucleocytoplasmic transport
gat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120832703 (pnn)
03015 mRNA surveillance pathway
120832703 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gat03019
]
120832703 (pnn)
03041 Spliceosome [BR:
gat03041
]
120832703 (pnn)
Messenger RNA biogenesis [BR:
gat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120832703 (pnn)
Spliceosome [BR:
gat03041
]
Complex C
Other components
EJC/TREX
120832703 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Toxin_trans
Motif
Other DBs
NCBI-GeneID:
120832703
NCBI-ProteinID:
XP_040055130
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All DBs
Position
XV:13381470..13386536
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AA seq
667 aa
AA seq
DB search
MAVVVRSLQDQLEKAKESLKNVDDHIRKLTGRDPNESRPGQNRRLGGPMAGPGGGRGRGL
NLLRRSLSDMGSGGPPAKQRDIEGALLRLAGDQRARRDARQDSDADDDDDDKKPALQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESHVSTEKQKRRTEIEQK
LEVQAEAEKKKAESDKRELFEERRAKQTELKLLEQKVELAQLQEEWNSHNNHLVKFIRTK
TKPHIFFVPGKICSATQKLLDDSTKKLNAVFDERREAFTEHLSKMEARPRRQPNRDQDGH
MAASGMDHSAEGKPTGQVVKGTGNKGHVEMEDEEDEEDEEDREKKGDRKVTAEDNKGEEV
LKKDEVEMVELIEEEEEEEDEKKVGEEGIKDVEVMGQKEESSGSEEMEVGGGPEQVDRRE
GKEEETFSEQGPTDLQSEKRQDAQSSEAAAANPGRQPQLGHTAGEPAVKPSENTASAPTP
EPQAAPPQPGQDVIPGPEVQNRAPEKPVVEEKQGDEAPQKLPGSQEALGAPPAPSKGEDS
GRGRQKEKEPKKSRGHSKSSSSSSSGSSSSSGSSSSSGSSSSSSSSSSSSSSSSRSRSRD
GSKRKRRPSDKARDRKKGEEKGNRKRGGRDSKGPKEKEKKKKSEEGRPRSSRSDREHKER
DRKDKRR
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtgcggagtctgcaagaccagctcgaaaaagcaaaagaaagcctgaaa
aatgtggacgatcatattcgtaaattgacgggacgtgaccctaatgagtcaaggccgggt
cagaaccgtcggctcggcggccccatggcaggcccgggtggaggtagaggcaggggattg
aacctgctcaggcgcagtctctcagacatgggaagcggcggcccccctgccaagcagagg
gacattgaaggagctctgctgaggttggcgggggaccagagggccaggagagacgcgcgg
caggacagcgacgctgacgatgatgacgacgacaaaaagccggcgttgcaatcgtccgtg
gtagctacctccaaggagagaacacgcagggacctcatccaagatcaaaccatggatgag
cggggcaaacagaggaaccggcgtatgttcggcctgctgatggggaccctgcaaaagttc
aaacaagagtcccacgtctccacagagaagcaaaagcgtcgtacggagatcgagcagaag
ctcgaggttcaggctgaggctgagaaaaagaaggccgagagtgataagagagagctgttt
gaagagcggagagccaaacagactgagctgaaactgctggaacagaaagtggaattagct
cagctgcaagaggagtggaacagccacaacaatcatctggtgaaattcattcgtacaaag
accaagcctcacatcttctttgtacctggaaaaatttgttccgccacacaaaaactcctc
gatgactccaccaagaaactaaatgccgtgtttgacgagaggcgcgaggcttttaccgaa
catctcagcaagatggaggcccgcccccgcaggcaaccaaaccgcgaccaggacggacac
atggcagcgtcagggatggaccactcggcggagggtaagcccacgggtcaggtagtcaag
gggacaggtaacaaggggcatgtagagatggaggacgaggaagacgaggaggatgaggag
gacagggaaaagaagggagacagaaaggtgacagcggaggacaacaaaggggaggaagtg
ttgaagaaggacgaggtggagatggtggagttaattgaggaggaagaggaggaggaggat
gagaagaaggtaggggaggaggggattaaagacgtagaggtcatggggcagaaggaggaa
agctcagggtcagaggagatggaggtggggggtgggccagagcaggtggacaggagggag
ggaaaggaggaagaaacatttagtgagcaggggcccactgacctccaaagtgagaagcgc
caggacgcccagtcctctgaagcagccgcagcaaacccgggccgccagccccagctcggc
cacaccgcgggggagccggcagtaaagccctccgagaacacggcgtccgctccaacccca
gagccccaggcggcccccccgcagccggggcaggatgtcatccctggccccgaggtccaa
aacagggcaccagagaagccggttgtggaggagaaacaaggggacgaggctccccaaaaa
ctgcccggttcccaggaggcactcggcgcccccccggcgccctctaagggggaggacagt
gggagagggaggcagaaggaaaaggagccaaagaagagtcgcggccacagcaaaagctcg
tcgtcttcctcctccggctcctcctccagctcaggctcctcatcgtcctctgggtcgagc
tcctccagctcgtcctcgtcctcgtcctcatcgtccagcagccgaagtcgcagccgagac
ggcagcaagcgcaagaggaggccgtctgacaaggcccgggatcggaaaaaaggagaggag
aagggtaaccgcaagcgaggaggcagggactcgaaggggcccaaggagaaggagaagaag
aagaagagcgaggaaggaaggccccggtcgtcccgtagcgatagggagcataaagagaga
gacaggaaggacaagaggcgctga
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