Gasterosteus aculeatus (three-spined stickleback): 120832782
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Entry
120832782 CDS
T07457
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04140
Autophagy - animal
gat04148
Efferocytosis
gat05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120832782 (vps39)
04148 Efferocytosis
120832782 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120832782 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120832782 (vps39)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
120832782 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
WD40_like
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
120832782
NCBI-ProteinID:
XP_040055297
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All DBs
Position
XV:complement(1966792..1981324)
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AA seq
876 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCLAAWEEWLLVGTKPGHLLLYRIKKDAGTNRFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVAKAKGATLFTCDLQHTSTGE
ERLRMCVAVKKKLQLYYWQDREFHELQGDFSASDIPKSMAWCENSICVGFKRDYYLIRMD
GRGTIKDLFPTGKQLEPLVAPLADGKVAVGQDDLTVVVNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSVELQRPRFITSAGQNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKKQQIHHIQNLFAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPALSVAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVAMVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGGENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDNVLNFLKEGFKELAIPYLEHIVYEWE
DKEPEFHNVLIQLYLERVQGLMKQYLNSLPEGVAAVAAGKEEGELGEFRNKLLSFLNIST
SYEPSRLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILNDTSMAEAYCHSHYSSAVE
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALRVLELHHSKLDTSKAINLLP
ANTQIREIRVFLESVLEEKARRKRSNQVLKSLLQAEFLRVQEERIFHQQVKCVITEEKTC
RVCRKKIGTSAFARYPNGVVVHYFCCKDRNACPTEQ
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcgtacgagccagtgcctattttggagaaacttcctctccagattgactgt
cttgcggcctgggaggagtggttgctcgtgggaacaaagccggggcatcttcttctctac
aggattaagaaggatgcaggcaccaaccggtttgaggtgacactggagaaatcaaataag
aacttctcaaaaaagattcagcagctctacgtcgtctcgcagtacaaaattcttgtcagt
cttctcgagaacaacatccacgtccacgacctcctgaccttccagcagatcactgtagtg
gccaaagccaaaggcgccacgctcttcacctgtgacctgcagcacaccagcacaggagag
gaaaggttgagaatgtgtgttgcagtgaaaaagaagcttcagctgtattactggcaggac
agagagttccacgaactgcagggggactttagtgcatctgatatcccaaagtccatggct
tggtgtgaaaactccatatgtgttggtttcaagcgagactattacctcatacggatggat
ggccggggcaccatcaaggatctctttcccactggcaaacagctggagcctctggttgcc
ccactggctgatgggaaggtggcagttggccaggatgacctcactgtggtggtaaacgaa
gagggcgtttgtacccagaagtgtgccctgaactggaccgacatcccagtagcaatggag
caccagcctccgtacatcatagctgtccttcctcggtacgtggagatccggacgctggag
ccccggctgctggtgcagagtgtggagctgcagcgacctcgcttcatcacctcggccggg
caaaacatagtgtacgtcgccagcaaccactttgtgtggcgcctggtgcccgtgtcgata
gccacgcagatccggcagcttcttcaggacaagcagttcgagctggctcttcagctggcg
aagatgaaggacgattcagacggcgataagaagcagcagatccatcacatccagaatctc
ttcgccttcaatctgttttgccagaagagatttgatgactccatgcaggtgtttgccaaa
ctgggcacagatcccacccatgtgatcgggctgtacccagacctgctcccctcggactac
cgcaaacagctgcactacccaaaccctctgcctgctctgtccgtggcggagctggagaag
gctcatctcgctctcatcgattatctcacacagaagcgcagccacctggtgaagcagctg
aacgactccgacccgtctacaacgtctccgctgatggaaggcacgccgactattaagagc
cgcaaaaaactcctgcagatcatcgacaccacgctgctgaaatgttacctgcacaccaac
gtggccatggtgtcccccctccttcgcctggagaacaaccactgccacatcgaggagagc
gagtacgtcctgaagaaggcccacaagtacagcgagctcattatcctctacgagaagaag
ggcctccaccagaaagctctgcaggtgctgctggaccagtccaccaaggccaactctccg
ctgaagggccacgagcggacggtgcagtacctccagcggcttggaggggagaatttggga
atcatctttgagttttctccttgggtgttgaagatctgtcctgaggacggcctcaagatc
ttcacagaggacctgaccgaggtggagactttgcccagagacaatgtgctgaacttcctg
aaggagggcttcaaggagctcgccatcccgtatttggagcacattgtgtacgagtgggag
gacaaggagccggagtttcacaatgtgctgattcagctctacctggagagggtccaaggc
ctcatgaagcagtacctcaactcactgccagaaggagttgcagccgttgctgcggggaaa
gaggaaggtgaactgggagagttcaggaacaagctgctgtctttcctgaatatttccacc
agctacgaaccatccagactcatcagcgacttccccttcgacggcctgctggaggaacgg
gctctgctcctgggtcggatgggcaaacacgagcaggcgctcttcatctacgtgcacatc
ctgaacgacaccagcatggccgaagcgtactgtcacagccattacagcagcgccgtcgaa
gggaacaaagacgtctacctgtccctgctgcggatgtacctgtcccctcctgacgtgcac
tgcctggggcccatcaagatggagctgtcggagcctcaggccaacctgcaggcggccctc
cgcgtcctggagctgcaccacagcaaactcgacactagcaaggccatcaatctgctgcca
gcaaacactcagatccgagagatccgggtcttcctggagagcgtgctggaggagaaggct
cggaggaaacgcagcaaccaggtgctgaagagtctgctgcaggccgagttcctccgagtg
caggaggagcggatcttccaccagcaggtgaagtgcgtcatcaccgaggagaagacctgc
cgcgtctgcaggaagaaaataggaaccagtgcgttcgcccggtaccccaacggcgtggtg
gtgcactacttctgctgcaaggaccgcaacgcgtgtcccaccgagcagtga
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