Gasterosteus aculeatus (three-spined stickleback): 120833240
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Entry
120833240 CDS
T07457
Symbol
si:ch211-266g18.9
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120833240 (si:ch211-266g18.9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120833240 (si:ch211-266g18.9)
Membrane trafficking [BR:
gat04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120833240 (si:ch211-266g18.9)
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Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
120833240
NCBI-ProteinID:
XP_040056091
UniProt:
G3P7F0
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Position
XV:complement(9038352..9043363)
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AA seq
838 aa
AA seq
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MAFRAFTHSHVYEKQPASKEKDKSSIQCIERYDQNVYLGTKDATVLHLILPSGTDGDQSP
GQSKIRECRLRKLGSSNPVAQLRVVPLFNHLLILWDRSVTAFNMFSLEPVPALKKIQHVN
LFEVCNSLLAAQAEGVKMVTSSSRRKAIRVHVVGVDRWDVVKEVSLLQDPVALAVDGGCV
CVGTSDRYLLCDIRTGSSDELFPHSHSRQRVIVTSMGRGEFLLNGPESLGMFVMKTGICQ
RPPLQWPQEVLAAGVCFPYILTLQPQVLSVYSAVDQQCKQTVSLSGAKGLLCTSDGVLVF
TERDIFSLRLVPPEEQIHTLVMHERFEEALMLLDAVQDQLPLDSYKELQKAVTCLAGLVH
FYQKDFSAAMDLFIAGELDPREIIRLYPDFQSCLSEEFQSKLDHLNKGRDVQVVCRDDRN
TFHHYLAFLGDFLRAVRGTVQGLKCSKEVDYALLRLYVEVGDTENLQQLVAFPNLCSLDC
CVPVLERHNRYFAVGSLYQSHGYYIDAIETWVKIEDGLHKDPSCSDVYGHIVQTLSQLPD
RDVVWKFADWTLQRNQEIGVQIFNKRPPDVQFETQDVLALMEKYPLAMLHHLEFLIHDLN
SEDERHHNRLALAYVTQSLREEEDTDLRGTRAKLQQLLWESRFYDVSTVYERVEWTTLRL
EKAILLGKTGGHSQALQVLVHQEGDLKAAEAYCCRAARGRDTVFRQTLLLTLLQMYLSSE
DLGSAAVDLLNNHPRVLAAEKVIRLLPDSWSVQLVSQFLVGSLRETFHQRRMAQLQKAMA
QVELTRHKVIWMHTSKRKFRLDKGQKCKVCQKDLAEPEFACNLTGEVMHTSCSGFPST
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcttttagagcatttacacactcacacgtctatgaaaagcaaccggcctcaaaagaa
aaggacaaatccagcatacagtgcatcgagcgctatgaccaaaatgtgtatttagggacc
aaagatgcaacagtcctgcatctcatcctccccagtggcacagatggagaccagagtcct
ggccagagcaaaatcagagagtgtcggctgagaaaactaggctcaagtaaccctgtagct
caactgagggtagtcccacttttcaaccatctgctgatcctgtgggaccggagcgtcact
gccttcaacatgttctccttggagcctgttcccgctctgaagaagatccagcatgtgaat
ttgtttgaggtgtgcaactcactgctcgcagcacaagcagaaggtgtgaagatggtgact
tcctccagtcgcaggaaagcgatccgggtccacgtggtgggagtggataggtgggacgtg
gtcaaggaggtgtcgctgctccaggaccccgtggccttggcggtggatggtggatgtgtg
tgtgtaggtaccagcgacaggtatctgctctgtgacattcggactggaagcagcgatgag
ctttttcctcacagtcacagcagacagcgtgtcattgtaacctcaatgggacgaggggag
tttctcttaaacgggcctgaatctctgggcatgtttgtgatgaagacagggatatgccag
cgccctcccctccagtggcctcaggaggtgctggcagccggagtgtgtttcccttacatc
ttaaccctgcagccccaagtgctgtctgtctacagcgccgtagatcagcagtgcaaacag
actgtgagtctcagcggagcgaagggtctcctctgcacatcagatggcgtgttagtgttc
acagagagggacattttcagcctgcgcctggtgccaccagaggagcagatccacacactt
gtaatgcatgagaggtttgaggaggccttaatgctgttggatgcagttcaggatcaactt
ccacttgactcatacaaggagctgcagaaggccgtcacttgcctcgctggattggtccat
ttttaccaaaaggatttttctgcggccatggatctattcattgcaggtgagctggacccg
agggaaatcatccgcctctaccccgacttccagtcgtgtctcagcgaggaatttcaatcc
aagctcgatcatctgaacaagggcagggacgtccaggtggtctgccgagacgacaggaac
acatttcatcattacctggccttcctgggagatttcctcagagctgtcagggggacggtg
caaggcctaaagtgcagtaaggaggtggactacgccctcctgaggctgtacgtggaagtg
ggagacactgaaaatctgcagcagcttgtggcatttcccaatttgtgcagtttggactgc
tgtgttccggttttggagcgacacaacagatattttgccgtaggttccctctatcaaagc
cacggatactacattgatgcaattgagacttgggtgaaaattgaagatggcctccacaaa
gacccgtcctgctcagatgtgtatggccatatagtgcagactctcagccagctgccggac
agagatgttgtgtggaaatttgcagactggactcttcaaagaaaccaggagattggggtg
cagattttcaacaagcgtccgccagatgttcaatttgagacacaggatgtcctcgctctc
atggagaagtacccgctggcgatgcttcatcatcttgagttcttaatccatgatttgaac
agtgaggatgagagacaccataaccgcctggccctggcatatgttactcagtcgctgcga
gaggaagaggacacagatttgcgggggacccgggcgaagttgcagcagcttctatgggaa
tccagattttacgacgtctccactgtatacgagagagtcgagtggacgactctcaggttg
gagaaagccatcctcttggggaagaccggtggacactctcaggcactgcaggtgcttgtt
caccaggagggggacctcaaggctgcagaggcctactgctgcagggccgcgcggggcagg
gacacagtgttcaggcagaccctgctgctcaccctgctccaaatgtacctgagctcggag
gacctcggcagcgcggccgtggatctgctcaacaaccaccctcgggtcctggcagcagag
aaggtcatacggctcctgcctgattcctggtctgttcaactggtctcccagttcttagtt
ggatccctcagggagacattccaccagaggcgaatggcgcagctgcaaaaagctatggcc
caggtggagctcacgcgacacaaggtcatttggatgcacacctcaaaaagaaagttcaga
ctggataagggccagaaatgcaaggtttgtcagaaagaccttgcagagccagagtttgcc
tgtaacctcaccggtgaggtgatgcacacaagctgttctggttttccctcaacgtaa
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