Gasterosteus aculeatus (three-spined stickleback): 120833666
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Entry
120833666 CDS
T07457
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04382
Cornified envelope formation
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120833666 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120833666 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120833666 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120833666 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120833666 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120833666 (col4a2)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120833666 (col4a2)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120833666 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120833666
NCBI-ProteinID:
XP_040056941
UniProt:
G3NH30
LinkDB
All DBs
Position
XVI:complement(7810576..7856336)
Genome browser
AA seq
1670 aa
AA seq
DB search
MPGQRDGGPKDLRMLLLCLCVAILASGAQAGGKKHSGPCGGRDCSGGCKCFPEKGGRGHP
GPLGPQGPHGPLGRPGDFGIEGPKGQKGDRGRSGIIGPKGAVGNAGVPGFSGNDGIPGHP
GQAGPRGKPGADGCNGTKGDSGLPGPPGYNGSPGLIGQSGWKGQKGDSLDVSVFMRRFRG
DPGTPGLNGIFGSQGNPGWMGNRGLPGPKGPSGPPGPRGPKGTMPKVLKGLRGEQGDIGP
QGLPGNSTHQQVFFPSAPRGEKGLKGESGDPGDNKGETGVTGLPGPRGLSGQDGRPGLRG
DTGDQGPKGGDGSKGDRGDPGELITEPLWPGSTTAGPPGPLGEQGPRGERGTVGDQGVPG
PPGIPASDTQQQDWGFTGPFGMKGEPGEKGQPGEPGRPAESPGPPGDRGRPGASGPRGPK
GTWDEFFKGAPGGRGRPGNAGSKGGKGDHGLCECDVVNSSPGLPGPAGEGGDAGMTGEFG
REGDSGDPGPQGNKGLPGFPGVDGPTGQKGRKGDSIVGSQKGQLGDPGDRGRDGEPGALG
APGRNGFPGMPGSQGFPGEGPKGEVGDKGFPGRPGPPGISGLIGTAGSVLGGIRGQRGLP
GEDGLPGYDGVPGSPGAPGGCSETEDGGQVDVTGSLCDAFPGPPGLHGPPGPSGLPGYPG
LPGQKGPRGPLGVIGEKGETGDQGIGGLPGPPGFSGPRGDLGVPGRKGSVGAPGVPGASG
RYGLQGEKGVHGEVFGASTGPPGEPGLPGIQGNKGQIGDPGAFGFPGIPGMPGMIGFKGE
RGPLGLQGEEGRPGPTGQYGYPGDPGQAGPLGTLGSTGQPGFTGERGTEGDLGPPGPMGL
KGIPGKYGNDGVVGESGPPGEGGPPGADGRPGLPGIKGNKGSPGMSGFEGIRGDIGVKGV
SGFVGEPGVPGQVGLKGVKGQSGEKGERGETGPPGNKPQIPFQKRSEMKGAKGDFGKYGN
QGFTGPRGIKGLPGVPGYEGTHGLPGSPSNKKGYPGDLGAEGLPGMKGMPGPSGNRGIPG
FEGMQGNRGIKGSPGAYGASGDAGRKGGKGDKGPRIDLPGTTGLRGEYGLPGETGQKGLT
GQTGDSGSPGFDGIEGKKGEAGDPGTGGYPGADGQRGTPGNQGQKGFPGPPGKDGNPGLP
GFPGNKGFPGLKGLYGLDGLKGQKGIPGTPGLDITGPAGEPGGKGEKGQSGDANSQSGAP
GSAGLKGFQGPQGDQGQPGLPGLRGPEGQSGTPDRPGRRGEPGSTGPKGYQGFPGASGFP
GVDAPPGAKGVPGIHGYPGVPGRKGFKGDQGSFGYRGPNGISGKKGIKGDQGVMGLPGGI
GVKGERGPVGPKGNTGPQGFKGFPGKQGPIPIPILLPGDRGPGGPQGIQGPKGHSGEPGP
QGPPGDAGFIGPSGQKGMPGISGRPGTPGFRGEFGKVGHPGLLGMEGRRGNPGVPGLPGM
PGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYLEGQEKAHNQDLGLAGSCLPRF
NSMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEAEIKPYISRCSVCEAPSVAIA
VHSQDITIPQCPAGWRSMWIGYSFLMHTAAGNEGGGQSLSSPGSCLEDFRTTPFIECNGA
KGACHYFANEHSFWLTSIDRSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgccgggacaacgggacggaggaccgaaggacctgaggatgctgctgctgtgcctctgc
gtggccatcctcgcctccggagcgcaagcgggtgggaagaagcacagcggcccctgtgga
ggaagagactgcagcggaggatgtaaatgtttcccagagaagggtggcaggggtcaccct
ggccctctcgggcctcagggcccccacggccctctggggagaccgggggattttgggatt
gaaggcccaaaggggcagaaaggtgaccgcggccgtagcggcatcataggtccaaaaggc
gccgtgggaaatgccggtgttcctggattctctggaaacgacggcatccccggccacccg
ggacaagccggacccagggggaagccaggtgcggacggctgtaacgggacgaagggcgat
tcagggttaccggggccacccggctataatggctcacctggtttaattggacaatcgggc
tggaagggacagaagggagactctctggacgtcagtgtgttcatgaggcgcttcagggga
gatccgggcacaccaggactcaacggaatatttgggtctcagggaaatccgggatggatg
ggtaacagaggtttaccaggaccaaagggtccctcagggccccccggcccccgtggacca
aagggcaccatgcccaaagtcctgaagggattgagaggagaacaaggggacatcggacca
caagggctaccaggaaactctactcatcagcaggttttctttccctcggcacctcgcgga
gagaaaggtctgaagggagaatcaggagacccgggtgacaacaaaggagaaactggtgtg
acgggattacctggaccacggggtttgtctggccaagatgggcgtcctgggctcaggggg
gataccggagatcaaggaccaaaaggtggagatggttctaagggagacagaggtgaccca
ggagaactgataacagaacccctctggcccggctctacaacagctggtcctcccggtcct
cttggtgagcagggtccgcggggggagaggggcacggttggagaccaaggcgtccctgga
cccccgggtattcccgcctctgacacccagcaacaagattggggttttacggggccattt
ggtatgaaaggcgagccaggagagaagggccaaccaggtgaaccaggacgccctgctgag
agtccaggtcccccaggcgacagggggcgcccgggcgccagtggccctcgagggccgaag
ggaacatgggatgagttcttcaaaggggctcccggtgggaggggaagacccggcaatgca
ggctccaaaggagggaaaggcgatcacgggctgtgtgaatgcgatgtggtaaactcttca
cctgggttacctggccctgctggtgagggtggtgatgccgggatgactggagagtttggt
cgggagggggattcaggcgacccgggtccccaaggaaacaagggattgcctggatttcct
ggggtcgacggtccaacgggtcaaaagggtcgaaagggagattcgatcgtgggctcacaa
aaaggacaacttggcgatccaggggatcgcgggcgagacggtgagcccggcgctttgggt
gctccgggccgaaatggttttcctggcatgcccgggagccaaggttttccaggtgaaggt
cccaaaggagaagtgggagacaaaggtttcccgggacggcctggtccacctggtatatcc
gggttaattggaacagctggttcagtccttggtgggatcagaggccaacgtggtttacct
ggtgaagatggcctcccggggtatgatggagttccagggtctcctggcgccccaggcggc
tgtagtgaaacagaagatggaggacaggtggatgtaacaggtagtctatgcgatgctttt
cctggacctcctgggctgcatggacctccaggacctagtggactaccaggttatccaggt
ctcccgggccaaaaaggaccccggggtccattaggagtaattggagaaaagggagaaaca
ggtgatcaaggcattggtggccttcctggaccaccaggtttttccggcccccgtggagac
ttgggagttccaggcagaaaaggttcagtaggagcccctggtgtgcctggtgcaagcggc
cggtacgggttgcaaggtgagaagggtgttcacggagaggtctttggagcatcgacagga
ccccccggtgaaccaggactgcctgggattcaaggcaataaaggccagatcggagatcca
ggggcattcggctttccaggaatacctggcatgccaggcatgattggcttcaagggtgag
cgtggcccactgggcctgcagggagaggaggggagacccggcccgactggccagtacggc
taccccggtgatcctggacaagcaggtcctcttgggacgctcgggagtactggacagcca
ggttttactggagagaggggaactgaaggagacctgggcccacctggtccaatgggatta
aaaggcatcccagggaagtacggtaatgatggtgttgttggagagtctggccctccaggg
gaagggggaccaccgggtgcagatggacgtccaggacttccaggaataaagggaaacaaa
gggtcccctggcatgtcaggttttgaggggatcaggggtgatataggggtaaagggcgtt
agtggttttgtcggagaacctggagttccgggacaagttggcttaaaaggagtgaagggt
caaagtggagagaaaggtgaacgtggcgagacaggaccacccggaaataagcctcaaatc
cccttccagaagcgtagcgagatgaagggagccaagggtgacttcggaaaatatggaaat
caaggttttaccgggccgagaggtattaagggtttgcccggtgtgccaggctacgaggga
actcatggtcttcctggaagccccagcaataagaaaggttaccctggtgacctgggtgca
gaggggttgccagggatgaaaggaatgccaggtccaagtggaaaccgaggaattcctggt
tttgagggaatgcaaggcaacagggggattaaaggaagtcctggtgcctacggagcatca
ggagacgcaggaaggaagggaggcaaaggtgacaaagggccacgcatagaccttccagga
accactggattaagaggagagtatggccttccaggagaaacaggccagaaaggattaact
ggacaaacgggggacagtggttcacctggttttgatggaatcgaagggaaaaagggagag
gcaggtgatccgggaacaggagggtacccaggcgctgatgggcagagggggacgcctggt
aatcaaggtcaaaaaggctttcctggacctcctggaaaagatggaaaccctgggttaccc
ggtttcccaggaaacaaaggtttccctgggctgaaaggcctttatggattagatggactg
aagggacaaaagggtatcccaggaacaccaggtctggatatcactggaccagctggggaa
ccaggaggcaaaggagaaaagggacagagtggcgacgccaacagccagtctggtgctcct
ggctctgcgggtctgaaaggcttccagggacctcaaggtgaccaaggtcaacctggactg
ccgggattgcgcggcccagaaggacaaagcgggactccggacagaccaggacgccgcggt
gagccgggctctacgggacctaaagggtaccaaggtttccctggagccagcggatttcct
ggtgtggatgccccccctggggcgaagggtgtgccgggaatacatgggtaccctggagtc
cccggcaggaaaggattcaaaggagatcaaggatcatttggataccgggggccaaatggt
atttctggaaagaaaggcataaagggagaccaaggagtaatgggacttcccggcggtatc
ggtgtaaagggagaaagagggccagtcggtccaaaaggaaacactggacctcaaggtttt
aaaggatttccaggaaagcagggtcctattcccatccctattctccttccaggcgataga
ggccctggaggaccacagggtatccaaggaccaaagggccacagcggggaaccagggcca
cagggcccccctggtgatgcaggtttcataggacccagtgggcagaagggcatgcccggg
attagtggtcgtccaggaacacctggatttcgtggagagtttggaaaagtggggcacccc
ggcctgttagggatggaaggtcgccgcggtaaccctggtgtccccgggctgcctggtatg
ccgggccgcagcgtcagcgtgggttacttgctggtgaaacacagtcaatcggatcagaca
cccatgtgtcccgtgggtatgtctaaactgtgggacggctacagtctactgtacctcgag
ggccaggaaaaggcccacaaccaggatcttggtttggcgggctcctgtctcccccggttc
aacagcatgcctttcctctactgcaatcccggagacatctgttactacgccagcagaaat
gataagtcctactggctgtcgacgacggctcctcttcccatgatgcccgttgaagaggca
gagatcaaaccgtacataagcagatgctcggtgtgcgaagctccgtccgtcgccatcgca
gtccacagccaggacatcaccatcccgcagtgtcccgcaggctggcgcagcatgtggatc
ggttactctttcctcatgcacacagcggcaggaaacgaaggcggaggtcagtccttatca
tcgcccggctcttgccttgaggacttccgcacaacgcccttcattgagtgcaacggggcc
aaaggcgcctgccactacttcgccaacgagcacagtttctggctcacctccatcgatcgg
tcgttccacacggagccggcgtcagagacgctcaaagcaggccagctcctgtcacgcatc
agtcgctgccaggtctgcatgaagaacttgtga
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integrated database retrieval system