Gasterosteus aculeatus (three-spined stickleback): 120834025
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Entry
120834025 CDS
T07457
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120834025 (sox1a)
Transcription factors [BR:
gat03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120834025 (sox1a)
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Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120834025
NCBI-ProteinID:
XP_040057697
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Position
XVI:complement(7087475..7098941)
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AA seq
344 aa
AA seq
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MYSMMMETDLHSPGPQTNTATGQTGPNSGSKANQERVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGPGGGGGVGLGVGMSSSGVGQRLESPGGHGGSAGSGYAHMNGWANGAYSGQ
VAAAAAAAAMMQEAQLAYSQHPGSGAHHHHHSHHHHSHNPQPMHRYDMTALQYSPISNSQ
SYMNASPSGYGGITYTQHQGSGVTSSATMGTLGSLVKSEPSVSPPVSSTHSRGPCPGDLR
EMISMYLPTGEPGDPSMQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaactgacctgcattcccctggcccccaaacgaacacggcc
acggggcaaacggggccaaatagcgggtccaaagcgaatcaggagcgggtgaagagaccg
atgaacgcgttcatggtgtggtcccgtgggcagcggaggaagatggcccaagagaacccc
aaaatgcacaactctgagatcagcaaacggctgggcgccgagtggaaggtgatgtccgag
gctgaaaagcgccccttcatcgacgaggcgaaacggttgcgagccatgcacatgaaggag
catccggattacaagtaccggccaagaaggaagaccaagacgctgctgaaaaaggacaaa
tattcccttgccggtggactgctttccgggcccggcggaggtggtggagttggtttagga
gtcggaatgagttcatccggagttgggcagaggttggagagccccgggggtcacggaggc
tccgccggctccggctacgcgcacatgaacggctgggcgaacggcgcgtactcggggcag
gtggccgccgctgcggctgccgcggcgatgatgcaggaggcgcagctcgcctacagccag
cacccggggagcggagcgcaccaccaccaccactcgcaccaccatcactcacacaacccg
cagcccatgcaccgctacgacatgacagcgctgcagtacagccccatctcaaactctcag
agctacatgaacgcttctccatccggctacggcgggatcacctacacacagcaccagggc
tccggcgtcacttcctcagccaccatggggacgttagggtcgctggtgaagtcggagccg
agtgtaagccctcccgtcagcagcacacactcacggggtccttgccccggagacttgaga
gagatgataagcatgtatttaccgaccggagagccgggcgacccgtcaatgcaaagtaga
ctccatgccttaccgcagcattaccagagcgccacggctggagtgaacgggacggtccct
ctaacacacatttag
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