Gasterosteus aculeatus (three-spined stickleback): 120834322
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Entry
120834322 CDS
T07457
Symbol
itgb5
Name
(RefSeq) integrin beta-5
KO
K06588
integrin beta 5
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04145
Phagosome
gat04148
Efferocytosis
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04810
Regulation of actin cytoskeleton
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120834322 (itgb5)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
120834322 (itgb5)
04148 Efferocytosis
120834322 (itgb5)
09144 Cellular community - eukaryotes
04510 Focal adhesion
120834322 (itgb5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120834322 (itgb5)
04810 Regulation of actin cytoskeleton
120834322 (itgb5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
gat04131
]
120834322 (itgb5)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120834322 (itgb5)
Membrane trafficking [BR:
gat04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
120834322 (itgb5)
Cell adhesion molecules [BR:
gat04515
]
Integrins
Integrin beta subunits
120834322 (itgb5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
PSI_integrin
EGF_integrin
I-EGF_1
EGF_2
vWA_SIBA-E
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
120834322
NCBI-ProteinID:
XP_040058195
LinkDB
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Position
XVI:16989309..17010992
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AA seq
722 aa
AA seq
DB search
MWSPAALAWSAALCCVLLETCVTPAGGLNLCMSGSATSCEECLLIHPRCAWCAQEVRTFG
RGRSLPSRCDFSQNLERRGCDVRLIESPTSSVSVLQDRPLSSKGSGSSQYDVVQIRPQKI
SVSLRPGDQTRFGVQVRQVEDYPVDLYYLMDLSLSMKDDLDTIRNLGTKLALEMGKLTSN
FRLGFGSFVDKNMSPFSYTAPKYQENPCNGFKLFPNCVPTFGFRHIVSLTDKVDRFNEEV
QKQMVSRNRDAPEGGFDAILQAAVCKEEIGWRKEAYHLLVFATDDVPHLALDGRLGGLVR
PHDGRCHLDDRNEYSASTEMDYPSLALLGEKLAENNIFLIFAVTKRLYVIYKNFTALIPG
TTVEILDQDSKNVIQLIVAAYNNIRSKVELSVWDHPEDIGLSFTATCQDGEPLPGLRKCG
DLKIGDTVSFDVRVEARSCPPRGANRSFTIKPVGFKDRLEVAVEYQCDCGCSRTAQSNSS
ACSATGTYNCGTCHCEPGYLGARCECQEGEAASVHFSACREAEGKQMCSGRGECSCNQCL
CYESEFGKIYGSYCECDDFSCARHKGVLCSGHGECHCGQCKCHAGYVGDNCNCSTETAPC
VADDGQMLAGFVWRVADVRGRLVWIVCVKPLLLRCRECIECRLFSSGRLADNQTCQRLCK
DEIITAEALSEPRSISTAHSISLPIHLSRLQASNPLYKQHASTHLVETDFDMFGKSFNGG
VH
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtggagccccgcggcgctggcgtggagcgcggctctgtgctgcgtgctgctggagacc
tgcgtgacccccgccggaggtcttaacctgtgtatgagcggcagcgctacttcctgtgaa
gaatgtctcctgattcaccccagatgtgcctggtgcgcacaagaggtacggactttcggg
aggggccggtctctgccgtcccgctgcgacttcagccagaacctggagaggaggggctgc
gatgtgcggctcatcgagtcccccaccagcagcgtctcggtcctgcaggaccggcctctg
agctccaaaggctccgggtcgtcccagtacgacgtggtgcagatcaggcctcagaagatc
tccgtcagcctgcggccgggagaccagacgcggttcggggtgcaggtgcggcaggtggag
gactacccggtggacctctactacctgatggacctgtctctttccatgaaagacgacctg
gacaccatccgtaacttgggcaccaagctggccctggagatgggaaagctcaccagcaac
ttcaggctgggcttcggctcctttgtggacaagaacatgtcccccttctcctacacggcg
cccaagtaccaggagaacccgtgcaatgggttcaaactgttccccaactgcgtccccacc
ttcggtttccgccacatcgtctcgctgacggacaaagtggaccgcttcaacgaggaggtg
cagaagcagatggtgtctcgcaaccgggacgcgccggagggcgggttcgacgccattctg
caggccgctgtttgcaaggaggagatcgggtggaggaaggaggcctaccacctgctggtg
ttcgccaccgacgacgtgccccacctggctctggacggccggctggggggcctcgtccgg
ccccacgacgggcgctgtcacctcgacgaccgcaacgagtacagcgcttccaccgagatg
gactacccgtctctggctctgctgggggagaagctggcggaaaacaacatcttcctcatc
ttcgcggtcaccaaacgtctctacgttatttacaagaatttcacagcactcattcctgga
accacggtggagatcctggaccaggactccaagaatgtgatccagctgatcgtcgcggcc
tacaataacatccgctccaaggtggagctgtcggtgtgggaccacccggaggacatcggc
ctttccttcaccgccacctgccaggacggagagccgctgccgggcctccggaagtgcggc
gacctgaagatcggagacacggtgtcgttcgacgtgagagtggaggcgcgaagctgcccc
ccccgcggcgccaaccgcagcttcaccatcaagccggtggggttcaaagaccgcctggag
gtggccgtggagtatcagtgcgactgcggctgcagccggacggcgcaaagcaacagcagc
gcctgcagcgccacagggacttacaactgcgggacctgccactgcgagccgggctacctg
ggcgcccgctgcgagtgccaggagggcgaggccgccagcgtgcacttcagcgcctgccgg
gaggccgagggcaagcagatgtgcagcgggcgaggggagtgcagctgcaaccagtgcctc
tgctacgagtcggagttcggcaagatctacggcagctactgcgagtgcgacgacttctcc
tgcgcccggcacaaaggcgtcctctgctcaggtcacggagaatgccactgcgggcagtgt
aaatgccacgccggctacgtcggcgacaactgcaactgctccaccgagacggcgccgtgc
gtcgcggacgacgggcagatgttagcggggttcgtgtggcgtgttgccgatgttcgtggg
cgccttgtgtggatcgtctgcgtcaaaccgcttctcctccgctgcagggagtgcatcgag
tgtcggcttttcagctcggggcggctcgccgacaaccagacctgccagcgcctgtgcaag
gatgagatcatcacggccgaggccctcagtgagcctcgctctatctccaccgctcactct
atttctctccccatccatctctcacgcctccaggcctccaaccctctgtacaagcagcac
gcctccacacatttagtagagacagatttcgacatgttcgggaagtcgttcaacgggggg
gtccactga
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