Gasterosteus aculeatus (three-spined stickleback): 120834931
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Entry
120834931 CDS
T07457
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a
KO
K06757
neurofascin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120834931 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
gat04515
]
120834931 (nfasca)
Cell adhesion molecules [BR:
gat04515
]
Immunoglobulin superfamily
L1 family
120834931 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
Bravo_FIGEY
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
BiPBP_C
DUF3792
Motif
Other DBs
NCBI-GeneID:
120834931
NCBI-ProteinID:
XP_040059265
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Position
XVII:18010899..18067036
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AA seq
1379 aa
AA seq
DB search
MLGQGGHGVLALMSLVLTLWHQAAPIEVPQDPKILQDLKQPPTIVKESVKDYIVDPRDNI
IIECEAKGNPVPTFSWRRNGKFFNIGKDPRVTMRKRSGTLEIGFRSGGRPEDYEGEYQCF
ATNDLGVALSNKILLRVSKAPLWPKEVLEPVVVPEGHSLVLNCSPPPGLPPPFTFWMNSA
MTPIPQDKRVSMGLNGDLYFSNVLTKDAHTDYSCNARFLFTQTIQQKNPFTLKVLTKEPY
NDTSYNATDPYGGTQSSQKANASIKWVKEGGDLPGRKVKFDNYNKTLKIINVSEEDAGEY
VCMANNHLGSIRHSIFVQVKAAPYWLDKPSNAVLAPEENGRLVCRANGNPKPNIQWLING
QPIESTPHSTSRQMLGDTIIFRSVQMGSSAVYQCNASNQHGYLLANAFVSVLDMPPRMLG
PKNQLIKVVENNRTFLDCPFFGSPLPELRWFKNGQGSGLDGGHYRIYINGTLEIKRARAE
DEGTYTCVANSMLGKAENQVRLEIKEPTRIVRVPERQSVVRGSAARFECKVKSDPSLPVT
VAWTKDDKPLSLGWRLSKDEESLTVPNVNEGDEGTYTCSVTSEIDQDSASARLTVLEEAS
LNPSVSSALPPDHPDPPMDLDLSDPAARSVRLTWIPGNDHRSPVTQFLVQFEEDRWEPGR
WQDLSTYPGDLNSVILQLAPFVNYQFRVIAINAVGRSQPSRPSPRYQTSGAAPDVIPRGL
RGWGSKKDNMEITWEPLLDLERNGPNLHYGVWWRRKDLGEEWSNVTTAESKHVVHNTETY
ISYEIKVQARNEFGRGPESNVVVGYSGEDKPVYAPTDLRVSKFDSTKAVLHWKPVDLSSV
QGEFKEYRLYFWRESSLVPGLVVSKEKKTKGFYSIAAEPSGILSDLVPYSRYKMFLVVAN
NLFEGPPSNTVEVITKEGVPDAPKFFTINRRTFDTIHLEWDKPLEPNGILIGYQLKYQIV
NGSRVGRAQLETLPPNVTHFSVRLPERSTRYKFYLSALTQVGAGEVYAEESPSSANEENL
TDSTALVELTDASVASAFSPTPPPLAPLPPTAVTPTTISTSTSATPTPPPPPPPTTTTAT
TTATTPSTTTTTTAEATTTTTTTERVTIKRTDQNVLVADRWKIWNLTVEPNSNYANVSWR
HNFPAGSSEFVLEFTLDSDKSVKVVPVKQQPPITVADLIAGAKYQLRVYSHELNSVSSES
FIFKTKPAYIDQVDIATQGWFIGLMCAIALIILILLIVCFIKRSRGGKYPGGGCVTGFAK
YLVRDKKDLPLDPVDQKDQDGSFDYQNGSSVPDRNENENRSLESSDEDNKPLQGSQTSLD
GNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKDETEGNESSEATSPVNAIYSLA
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atgttggggcaggggggccacggggtcctggctctcatgtcattagttctgacactgtgg
caccaagcggcacccatagaagtcccacaagacccaaagatcctgcaagacctgaagcag
ccccccaccatagtcaaagagtctgtgaaggactacattgtcgaccccagagataacatc
atcattgagtgtgaggccaagggcaacccagtgccaacgttctcatggcgaaggaacggg
aagtttttcaacatcgggaaagatcccagggtgacaatgcggaaacgctcgggaactcta
gagatcggtttccgtagcggaggacgaccggaggactacgagggggaataccagtgtttt
gcaaccaatgacctcggagtggctctgtccaacaaaatcctgctgcgtgtctccaaggcc
cctctctggcccaaagaagtgctggagccagtcgtggtgcctgaaggccactcgctggtt
ctgaactgcagcccaccaccaggccttcctcctccattcaccttctggatgaacagcgct
atgactccgatccctcaggataagagggtgtccatgggtctgaacggggacctctacttc
tccaacgtcttgaccaaagatgctcacactgactacagctgcaacgctcgcttcctcttc
acgcagaccatccagcagaagaaccccttcaccctcaaagtcctgacgaaggagccgtat
aatgacacgtcttacaatgctactgacccgtacggtgggacccagagctcccagaaggcg
aacgcctctatcaagtgggttaaggagggtggggaccttccagggaggaaggtgaagttt
gacaactacaacaagaccctaaagatcatcaacgtgtccgaggaggacgccggggagtac
gtatgcatggccaacaaccacctaggcagcatacgccactccatctttgtccaggtcaaa
gcggctccttactggctcgacaaaccctccaacgcggtgctcgctccggaggaaaacggg
cgcctggtgtgtcgggccaacgggaaccccaaacccaacatccagtggctgatcaacgga
cagcctatagaaagcactccccacagcaccagcagacagatgcttggtgacaccatcatc
ttccgctcggtgcagatgggaagcagcgctgtctaccagtgcaacgcctccaaccagcac
ggctacctgctggccaacgccttcgtcagcgtcctcgacatgcctccgaggatgctgggc
cccaaaaaccagctgatcaaagtcgtcgagaacaaccgcaccttccttgactgtcccttc
ttcggttctcctctgccggaactccgctggtttaagaacggacagggcagcgggctggac
ggaggtcactaccgcatttatattaatggcaccctggagatcaagcgggccagagcggag
gacgagggcacctacacctgtgtggccaacagcatgctgggcaaggccgagaaccaggtc
cgcctggagatcaaagagccgactcgcatcgttcgcgtcccggagcgccagtcggtcgtc
aggggctccgcggcgcgcttcgagtgtaaggtgaagtctgaccccagcctgcccgtcact
gtggcctggaccaaggacgacaaacctctgtccctgggttggaggctgagcaaagacgag
gagtcgttgaccgtccccaacgtgaacgagggggatgagggaacctacacctgctcggtt
acatctgagatagaccaggactcggcctccgcccgcctcacggtcttagaggaagcctcc
ctcaacccctcagtctctagtgccttgcctccagaccaccctgaccctcccatggatctg
gacctgtcagatcctgcagcccgcagcgttcgcctcacctggatccccggaaacgaccac
cggagccctgtgacgcaattcctggtccagtttgaggaggaccgttgggagccgggcagg
tggcaggacctgtccacatacccaggggacctcaactctgtcatcctgcagctcgccccc
ttcgtcaactaccagttcagggtcatcgccatcaacgcggtgggccgcagtcagcccagc
cgcccctcgccccggtaccagaccagcggagccgccccagatgtcatccccagaggtcta
cgaggatggggatcaaagaaggacaatatggagataacctgggagcctctgctcgatctg
gagaggaacgggccaaacctgcactacggcgtgtggtggcgacggaaggatttgggagag
gagtggagtaacgtgaccacagccgaatccaaacatgtcgtccacaacacagagacctac
atttcctacgagatcaaagttcaggccagaaacgagtttggacgaggaccagagtccaat
gttgtagttggatactccggagaggacaaacccgtctatgctcccactgacctgcgggtg
tcgaagtttgacagcaccaaggccgtcctgcactggaagcccgtggacctgagctctgtg
cagggagaattcaaggagtaccgactgtacttctggcgtgagtccagtctggttcctggt
ctagtggtcagtaaggagaagaagactaaaggtttctacagcatcgcggccgaaccgtct
ggcatcctcagcgacttggtgccctactccagatacaagatgttcctggttgtggccaac
aacctctttgaaggtccacccagcaacaccgtggaggtcatcaccaaggagggagtgccc
gatgctccgaagtttttcactatcaaccggagaacttttgacaccatccaccttgaatgg
gacaaacctctggagcccaacggtattctgattggataccagctcaagtaccaaatagtc
aacggcagcagagttggtcgtgcacagctggagactctcccgcccaacgtcacacacttc
agcgtacgacttccggagcgatctactcgctacaagttctacctgtcagcactcacacag
gtgggagccggcgaggtctacgctgaggagtccccctcgtccgccaacgaagaaaacctt
actgactccacagctctagtcgagcttaccgatgcctccgtggcctcggctttctctccc
actcctcctcctctcgctcctcttcctcctactgccgtgactcctacaaccattagtacc
tcgacttctgccactccgacacctcctcctcctcctcctcctactactactactgctact
actactgctactactccttctaccaccaccaccactacagccgaggcgaccactaccacc
acaactacagagcgggtcaccatcaagcgcactgatcagaacgtgttggtggccgatagg
tggaagatctggaatctgacggtggagcctaacagtaactacgctaacgtcagctggaga
cacaacttcccggccggcagcagcgagtttgtgctagagttcacactggacagcgacaag
tcggtgaaagttgtaccggtgaaacagcagccccccattacagtggcggatctgatcgca
ggcgccaagtaccagctgagggtttactcccatgagctcaacagcgtcagcagcgaatct
ttcatctttaagaccaaaccagcctacatagaccaggtggacatagccacccaaggctgg
ttcattggcctgatgtgtgccattgccctcatcatactgatcctcctcatcgtctgcttc
atcaagaggagtcgcgggggcaaatacccaggtggtggttgcgtgactggtttcgcaaaa
tatctggtccgtgacaaaaaagacctccccttggaccccgtagatcagaaagaccaggac
ggatcctttgattaccaaaatgggtcgtctgtccctgacaggaacgaaaacgagaacagg
tctcttgaaagcagcgacgaggacaacaagcctctccaaggcagccagacatcgctggac
ggcaacgtgaaggagagcgacgacagcctggtggactacggcgagggcggcgacggccag
ttcaacgaggacggctcgttcatcggccagtacacggtgaagaaggacaaggacgagacg
gagggaaacgagagctccgaggccacctcgcccgtcaacgccatctactcgctggcgtag
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