Gasterosteus aculeatus (three-spined stickleback): 120835410
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Entry
120835410 CDS
T07457
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
gat03036
]
120835410 (chd5)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120835410 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_CHD1_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
120835410
NCBI-ProteinID:
XP_040060252
LinkDB
All DBs
Position
17:2443550..2472837
Genome browser
AA seq
1995 aa
AA seq
DB search
MPGSLSNEDEGRDDMDFEDDMPDEDDEGKRMAVPLAPLGSFFSDGDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQPRADSDLEETSEVEEERERPEVGSGSESSAYGPTKKKKKKPRE
KKEKKPRKKKRDEEDDDEDDDDGNMKEPKSSGQLMHEWGLEDVQYGFSEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTAASGGPPGSQPGPLKKAKTKEGKGPGVRKRSRSAKDAKKKSKPKKTKAKSGPSVKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAPTKKIARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
PAAEVEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPL
KGKVQKILHWTWGEPPLPAELPDGPDGRPADPLANPPPRGRPEREFFVKWAALSYWHCSW
VSELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPQYAAMEERFYRY
GIKPEWMVMHRIINHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYDTHKATYWDHR
EQIVGEDQRPLVVKKGKKLKEDHQKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQL
EGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWE
REFELWAPDFHVVTYTGDKDSRAIIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTS
YELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEE
LFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKVDVFKNMPSKTE
LIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVE
APVQANGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGY
KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVVIYDSDWNPH
NDIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMS
KQELDDILKFGTEELFKDEMEAARAMGDNKEGEEGNVIHYDDDAISKLLDRSQDATEDTE
IQNMNEYLSSFKVAQYVVKEEDGEEEPEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR
NLGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQ
MKNEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGK
SEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEH
VNGKLSSPDLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPVPPEKTECLLGTTEDK
DSAEQDSKKLSEQESSSAEPPSVPEKAPDSEESKAGSEEKAADERDGGESPAAKTEPPAA
SKEPTPGRASPRPESVKDTERPSEKGETESSLAKTEDKENKPDDLKSDDALEGRLNGDKD
PLDETDESRKEDKNGYKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWHRRHDYW
LLAGIVTHGYARWQDIQNDPRYAILNEPFKTEIHKGNYLEMKNKFLARRFKLLEQALVIE
EQLRRAAYLNMTQDPGHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQ
LEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQPFSQGGFGC
SQMYSSSFAGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPSPPSSHLDKKSLDCLRDVSTP
DLKSGKPSDVICIED
NT seq
5988 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagcaatgaagacgagggacgagacgacatggattttgaagacgat
atgccagatgaggacgacgaaggcaagcgcatggcggtccccctcgcgcccctcggcagc
ttcttctccgacggcgactccctcaaacagcaaaagaagaagaagcccaaaaagatgaaa
gaggggaaaatgcccaaagttaagaagaggaaaaaggaggggggcatccagccgagagcg
gacagcgacctggaggagacctcggaggtggaggaggaacgggagcgtccagaggtcggc
tctgggagcgagagcagcgcctacggaccgaccaagaagaagaagaagaaacccagggag
aagaaggagaagaagcccaggaagaagaagagagacgaggaagacgacgacgaggacgac
gacgacggcaacatgaaggaacccaagtcgtccggccagctgatgcacgagtggggcctg
gaagacgtccagtacggcttctccgaggacgactacaagaccatcaccaactacaaggcc
ttcagccagttcctcaggcctctcattgccaagaagaaccccaagatccccatgtccaag
atgatgaccgtgttgggggccaagtggcgcgagttcagcgccaacaacccgttcaaaggc
gcgtccgccaccgccgtggccgccgccgtggccgccgccgtggaaacggtcaccgtggcg
cagccgacggccgcaagcggcggcccgccgggctcccagccggggccgctcaaaaaagcc
aaaaccaaagagggaaagggacccggagtgaggaagagaagcaggtctgcgaaggatgcg
aagaagaagagcaagccgaagaagaccaaagcaaagtcgggcccgagtgtgaagaagaag
aaagcttcctcgagtgaggaggacttcctggaggagtcggactttgatgacatcagcatc
cacagcgcctccgtgctgtctgacacctcgggggcccccaccaagaagattgcccgccgt
gggcgtaaaaaaaggaaaaaggaagacggcgacggctacgagacggaccaccaggactac
tgcgaggtgtgccagcagggcggggagatcatcctgtgtgacacctgtccccgagcgtac
cacctggtctgcctggaccccgagctggagaaggcccccgagggcaaatggagctgtcca
cactgtgagaaagagggcatccagtgggaggccaaagacgaggaggaggaagaggaggag
ccggcggcggaggtggaggaggacgaccacatggagttttgcagagtgtgtaaagatgga
ggcgagctgctgtgctgtgacacctgcccgtcttcctaccacatccactgcctcaacccg
cccctccccgagatccccaacggggagtggctgtgtcctcgctgcatgtgccctcccctc
aaagggaaggtccaaaagattctacactggacgtggggagaaccgccgctgccggccgaa
ctgcccgacggccccgacggcaggccggccgatccgctggccaaccccccgccgaggggc
cgtccggagagggagttcttcgtgaagtgggccgccctgtcgtactggcactgctcctgg
gtcagcgagctgcagctggagctgtaccacacggtgatgtatcgcaactaccagcgcaag
aacgacatggacgaaccgccgcccttcgactacggctccggcgaggaggagctcaacaac
gagaagcggaagagcaaggatccccagtacgccgcgatggaggagcgcttctaccgctac
ggcatcaaaccggagtggatggtcatgcaccggataatcaaccacagttttgataaggat
ggcgatgtgcattacctgatcaagtggagagacctgccctacgatcagtgcacctgggag
gtggatgactttgacgtcccggagtacgacactcataaagccacttactgggaccacagg
gagcaaatagtaggggaggaccaacgccccctggtggtgaagaaaggaaagaaactcaaa
gaggaccaccaaaagagggaggtccctcctgatgcccccatcatagatccaaccatcaag
tttgagcaccagccgtggtacatcaacgccacggggggaacgctgcacccataccagctg
gaaggcctgaactggttgaggttctcctgggctcagggcacagacaccatcctggccgac
gaaatgggcctcgggaagacggtgcagaccatcgtgttcctctactcgctgtacaaggag
ggtcattctaagggcccctacctggtgagcgcgccgctctccaccatcatcaactgggag
agggaatttgagctgtgggctccggatttccacgtggtgacgtacaccggagacaaggac
agccgggcgatcatcagggagaacgagttcaccttcgaggacagcgccgtgaaaacagga
cgcaaggtgttccgcatgaagaaagacacgcccatcaagttccacgtgctgctgacgtcc
tacgagctgatcaccatagatcaagccatcctgggctccatcacatgggcctgcctggtg
gttgacgaggcccacagactgaagaacaaccagtcaaagttttttagaatcctaaacggg
tacaagatctactacaagctgctgctcactgggactcctcttcagaacaatttggaagag
ctgttccacctgcttaacttcctcaccccagagcgcttcaataacctcgaaggcttcctg
gaggagttcgctgacatctcgaaggaggaccagatcaaaaagctccacgacctgctcggc
cctcacatgctcaggaggctcaaagtggatgtcttcaagaacatgccttcaaagacagag
ctgatcgtcagagtggagctcagccccatgcagaagaaatattacaagtttattttgacg
cggaattttgaggctctgaactccaaaggtggaggtaaccaagtgtccctgctcaacatt
atgatggacctgaagaagtgctgcaaccatccctacctgttcccagtggctgccgtggaa
gcccctgtgcaagccaacggctcgtatgatggaaaccaattggtgaagtcctcaggaaaa
ctcacgctgcttcagaaaatgctgaagaagctcaaggacgaaggacacagagtcctcatt
ttctctcagatgacaaagatgctggatctgcttgaagatttcctggagttcgagggttat
aaatacgaacgtattgatggaggcatcactggaggcctcaggcaggaggccattgaccgc
ttcaacgcaccgggcgctcagcagttctgcttcctgctgtccacacgggccggaggtctc
ggcatcaacctggcgagcgccgacactgtcgtcatctacgactccgactggaatccccac
aacgacatccaagcttttagcagagcccatcgtatcggccaaaacaggaaggtgatgatc
taccgcttcgtgacgcggggctcggtggaggagcgaatcactcaggtggccaagaggaag
atgatgctgacccacctggtggtgcggcccggcctcggctccaaaaccggctccatgtcc
aaacaagagctggatgacatcctcaagttcggcactgaggagcttttcaaagatgagatg
gaggcggcgcgggccatgggtgacaacaaggagggggaggagggcaacgtgattcactat
gacgacgacgccatctccaagctgctggaccgcagccaggacgccaccgaagacaccgag
atccagaacatgaacgagtacctgagctccttcaaggtggctcagtacgtggtgaaagag
gaggacggagaggaagagccggagcgggagatcatcaagcaggaggagaacgtggacccg
gactactgggagaagctcctccggcaccactacgagcagcagcaggaggatctggcccgc
aacctcggcaagggcaaacgcatccggaagcaggtcaactacaacgacacgacccaggag
gaccaagagtggcaggatgatctttcagacaatcagtcggagtactccgtggggtccgag
gacgaggacgaagatttcgaggagcggcctgaaggtggacgcagacagtctcgtaggcag
atgaagaatgagaaagacaaacccctgccgcccttgctggcacgagtcgggggcagtatt
gaggtcctggggttcaacgcccgccagaggaaggccttcctcaacgccatcatgcgctgg
ggaatgcctcctcaggacgctttcaactcgcattggctggtcagagacctgagagggaag
agtgagcgtgagttcagggcctacgtgtccctgttcatgaggcatctatgtgagccgggg
gcggacggagcagagaccttcgccgacggagtcccacgcgagggactgtctcgtcagcat
gtcctcaccaggatcggcgtcatgtccctcgtcaggaaaaaggttcaagagtttgagcac
gttaatggcaagctgagttccccagatctgattcccatcggcatggagctgaagaaactg
actgagagtttgtcttctgaccccaacacccctgtgcctgccagcccggtcgccacacag
cccgggacacccgtcccaccagagaagactgagtgtctcctggggaccactgaggacaag
gactccgcagagcaagatagcaagaaactctccgagcaggaatcgtccagcgcggagccg
ccgtccgtccctgagaaagcacccgacagcgaggagagcaaagccggctcggaggagaag
gccgcggacgagagggacggaggcgagtcgcccgccgcgaagacggagccgcctgccgcc
tccaaagagccgacgcccggtcgcgcctcgcctagaccggagtccgtcaaagacacggag
aggccctcggagaagggagagaccgaatcgtctctggcaaagactgaagacaaggaaaat
aagccagacgatctgaagagtgacgacgcattagagggtcgtttgaatggagacaaggac
cctttggacgagacggacgagagcaggaaggaggacaaaaatggatacaaagccaagttc
atgtttaatatcgctgacggaggttttacagagctgcacaccctctggcaaacggaggag
cgagcggcgctgtcttctggaaagatgcacgacatctggcaccgacgccacgactactgg
cttttagcgggtatcgtaacacacggctacgctcgctggcaagacatccagaacgacccg
cgctacgccatcctgaatgagcccttcaagacggagatccacaagggcaactacctggag
atgaagaacaagttcctggcccggcgcttcaagctgttggagcaggcgctggtgatcgag
gagcagttgaggcgggcggcgtacttgaatatgacgcaggaccccggccacccggccatg
gccctcaacactcgcttcgccgaggtggaatgtctggcagagtcccaccagcacctgtcc
aaggagtcgctggccgggaacaaacccgccaacgccgtgctgcacaaagtgctgaaccag
ctggaggaacttctgagcgacatgaaagctgacgtgacccgactgcccaacatgctgtcc
aggatcccgccggtgtcggcccgcctgcagatgtccgagaggagcatcctgagccgcctc
accagccgagggagcgagcccccgccgcagcagccttttagccagggggggtttggctgc
tcccagatgtacagcagcagctttgctggaggattcagaggaccgggcggtcagcccatg
gtcaactacagccagatgcctctgggaccctacgtcagcgtgtcctctaacggcccctcg
cccccttcaagccatctggacaagaagtcactggactgcttgagagacgtgagcacgcct
gacctcaagtcgggcaaacctagtgatgtcatctgcattgaggactag
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integrated database retrieval system
