Gemmatimonas aurantiaca: GAU_1617
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Entry
GAU_1617 CDS
T00878
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
gau
Gemmatimonas aurantiaca
Pathway
gau02020
Two-component system
gau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gau00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GAU_1617 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GAU_1617 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gau03021
]
GAU_1617 (rpoN)
Transcription machinery [BR:
gau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GAU_1617 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_AsnC-type
HTH_23
HTH_3
HTH_IclR
Sigma70_r4
LacI
HTH_31
HTH_Crp_2
HTH_AraC
Phage_CII
Motif
Other DBs
NCBI-ProteinID:
BAH38659
UniProt:
C1A8U9
LinkDB
All DBs
Position
complement(1938012..1939505)
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AA seq
497 aa
AA seq
DB search
MRTGLQQTTGLRQELKVNPRLYQAMDLLYMPLLDLQQHLKQELLTNPFLELVEPEDEEED
SSDADDVPEPQDMAEPEAPAEPEPEKSGDDEVDWEAVLLDGFETGGQREEHEQQEWHEPV
TVAGRDLADHLTEQLSLLALSPRQAFMAEEFVGNINDDGYLACTLEEIRDGANQVLRREA
EERDIDGEVPEFSEEEIEALLLIIQELDPPGVGARNLRECLLLQLRADGQADSLAGRLVA
EAFEELIARRWGEVAKRFGISPQAVQAAADEIAKLDPKPGLRFSAGSDNYIIPDLVVEKI
DGYYHIFLNDGNLPRLKISRIYTDIARDKKRFDTESKDFIATKLNSANWMIQAIEQRRQT
MLKVMHYIVDRQREFFERGVQGLRPLTLREVAEAVGMHESTVSRVTNEKFVQTPRGVLPL
KFFFSSGLSTSDGDDVSARGIKDQIEKLVSGEDPRNPLTDQAIVEILQETGVQIARRTVA
KYRDQLGVLPARMRKRV
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgggcctgcagcagacgaccggtctccgtcaggagctcaaggtcaatccacgc
ctgtaccaggcgatggatctgctgtacatgcccctcctcgatttgcagcagcacctcaag
caggagctgctgaccaatccgttcctcgaattggtcgagcccgaagacgaagaagaagac
tcgtccgacgccgatgatgtgcccgaaccgcaggacatggcggaaccggaagcgcccgct
gagccggaacccgaaaagtccggcgatgatgaagtggactgggaagccgtgctgctcgat
ggcttcgagacgggcggtcagcgcgaggagcacgagcagcaggagtggcacgaaccggtg
acggtcgcgggtcgcgatctcgcggaccatctcacggaacagctctcactgctggccctg
tcgcctcgtcaggccttcatggccgaagaattcgtcggcaacatcaacgacgacgggtat
ctggcgtgcacgttggaggagattcgcgacggcgccaaccaggtgttgcggcgtgaggcg
gaagagcgcgacatcgacggcgaagttccggagttctccgaagaagaaatcgaagcgctg
ctgctgatcattcaggaactcgatccgccaggcgtcggcgcgcgcaatctgcgcgaatgc
ctgttgctgcaactgcgcgccgatggtcaggcggactcgctcgccggtcgtctggtggcc
gaggcattcgaggagttgatcgcgcgtcgatggggagaagtggccaagcgttttggcatc
agcccgcaggccgtgcaggccgccgccgatgaaatcgcgaagctggatcccaagccgggg
ctgcgcttcagcgccggcagcgacaactacatcatcccggatctcgtcgtcgagaagatc
gatgggtactaccacatcttcctgaacgacggcaacctcccgcggctcaagatctcgcgc
atctatacggatatcgcgcgcgacaagaagcgcttcgataccgagagcaaggatttcatc
gccacgaagctcaactcggccaactggatgatccaggccatcgagcagcggcgtcagacg
atgctcaaggtgatgcactacatcgtcgatcggcagcgcgaatttttcgagcgcggcgtg
caggggctgcggccgctcaccttgcgcgaagtggccgaagcggtgggcatgcatgaatcc
accgtgagccgcgtgaccaacgagaagttcgtgcagacgccgcgtggggtgctgccactc
aagttcttcttctcgagtggtctctccacgtccgatggcgacgacgtgtcggcccgtggg
atcaaggaccagatcgaaaagctggtgtccggcgaagatccgcggaacccgctcaccgac
caggcgatcgtggagattctgcaggaaaccggtgtgcagattgcgcgacgcacggtggcc
aagtaccgtgaccaactcggcgtgctgcctgcgcgcatgcgcaagcgcgtctga
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