Gemmatimonas aurantiaca: GAU_2425
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Entry
GAU_2425 CDS
T00878
Name
(GenBank) formamidopyrimidine-DNA glycolase family protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
gau
Gemmatimonas aurantiaca
Pathway
gau03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
gau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GAU_2425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gau03400
]
GAU_2425
Enzymes [BR:
gau01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GAU_2425
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GAU_2425
DNA repair and recombination proteins [BR:
gau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GAU_2425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
zf-TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAH39467
NITE:
GAU_2425
UniProt:
C1AB61
LinkDB
All DBs
Position
complement(2843026..2843913)
Genome browser
AA seq
295 aa
AA seq
DB search
MPELPDVMIYVERLEATVVGQAPSAVRVHNPFVLRSVTPPLSAFEHREILGVRRLGKRIV
LQFTEEFALVVHLMIAGRLRWRPPDKRIAGKLALASLEFAHGTLYLTEAGTKRRASLHAV
QGVPSLQSFDRGGLEPLTCTVGELATVLRAENHTIKRSLTDPRLLSGIGNAYSDEMLHAA
QLSPMVLTSRLGDEDIARLHAAMQHTLRTWTDRLRQETGNGFPETVTAFHDEMAVHGRFG
KACPVCAAPVQRIRYADNETNYCARCQTGGRVLADRALSRLLKDDFPRTLDELAD
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagctccccgatgtgatgatctacgtggaacgcctcgaagcgaccgtcgtggga
caggctcccagtgcggtacgggtgcacaatccgtttgtcctgcgatccgtgacgccgcca
ctctccgccttcgagcatcgggagattctcggtgtgcggcgcctgggcaagcgcatcgtg
ttgcagttcaccgaggagttcgcgctggtggtgcacttgatgatcgccggccgtttgcgc
tggcggccgccggacaaacgcatcgcgggcaaactggctctggccagcctcgagtttgcg
cacggcacgctgtatctcacggaggcgggcacaaaacgccgggcctcgttgcatgcggtg
cagggcgtcccatcgctgcagtctttcgatcgtggtgggctcgagccgttgacctgcacc
gttggcgaattggccaccgtgttgcgagccgagaaccatacgatcaaacgatccctcacc
gaccctcggctgttgagcggcatcggcaacgcgtattcggacgagatgctgcatgcggcg
cagctctccccgatggtgctcacgagtcggctgggagacgaagacatcgcgcgcttgcat
gccgccatgcaacacacgctgcggacctggaccgaccggctgcggcaggagacgggcaac
gggtttcccgagacggtgaccgcctttcatgacgagatggcggtgcatgggcgattcggg
aaggcctgccccgtgtgtgcggcaccggttcagcgtatccggtatgcggacaacgagacc
aactactgcgctcgctgccagaccggcgggcgcgtgctggccgatcgggccctgtctcgc
ctgctgaaagacgacttcccacggactctcgacgaactggcggactga
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