Gemmatimonas aurantiaca: GAU_2948
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Entry
GAU_2948 CDS
T00878
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
gau
Gemmatimonas aurantiaca
Pathway
gau02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
gau00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GAU_2948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gau03021
]
GAU_2948
Transcription machinery [BR:
gau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GAU_2948
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
PhyR_sigma2
HTH_23
HTH_20
Motif
Other DBs
NCBI-ProteinID:
BAH39990
UniProt:
C1ABW3
LinkDB
All DBs
Position
complement(3464408..3465001)
Genome browser
AA seq
197 aa
AA seq
DB search
MPSPDFTDDHTELTSLEAYVPRVRAGDATAYEQLFRALHVSLVTFATRYTGDTARAEELV
QDVFFAIWQNRTEWSPNGSVRAYFYGAVRNRALNLRRRDALEQDWVTDTEHEGAEGILMG
SVAAGVSDAEQDRADLLARAHAALDALPERCRLVMHLRWREGLSYAEIAETMGIGVKGVE
NQLARGLKAVRTRLLGG
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
gtgccgtcccccgatttcaccgatgaccacaccgagctcacgtcgctcgaagcgtacgtg
ccgcgtgtgcgtgcgggagacgcgacggcatacgagcagttgtttcgcgcactgcatgtg
tcactggtaacctttgccacacgctacacgggtgacacggcccgcgcggaagagctggtg
caggatgtcttctttgccatctggcagaatcgcaccgaatggtcgcccaatggttcggtg
cgcgcgtacttctatggtgcggtgcgcaatcgggcgctcaacctgcggcgtcgggatgct
ctggagcaggactgggtcaccgacaccgagcacgaaggtgccgaggggatcctgatggga
tcggtggccgccggcgtttctgatgccgagcaggaccgtgccgatctgttggcccgcgcg
catgcggccctcgatgcgctgcccgagcgatgccgactggtgatgcacctgcgttggcgc
gaaggattgagttacgcggagatcgccgaaaccatggggatcggcgtgaaaggcgtggag
aatcaattggcccgtgggctcaaagccgtgcgtacaaggctgctgggcggctga
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integrated database retrieval system
