Gemmatimonas aurantiaca: GAU_3729
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Entry
GAU_3729 CDS
T00878
Symbol
deaD
Name
(GenBank) ATP-dependent DEAD-box RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
gau
Gemmatimonas aurantiaca
Pathway
gau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GAU_3729 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gau03019
]
GAU_3729 (deaD)
03009 Ribosome biogenesis [BR:
gau03009
]
GAU_3729 (deaD)
Enzymes [BR:
gau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GAU_3729 (deaD)
Messenger RNA biogenesis [BR:
gau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GAU_3729 (deaD)
Ribosome biogenesis [BR:
gau03009
]
Prokaryotic type
rRNA helicases
GAU_3729 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
WSD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BAH40771
UniProt:
C1AE44
LinkDB
All DBs
Position
complement(4378213..4379997)
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AA seq
594 aa
AA seq
DB search
MSDGEVGQDGATVSGFGALGVHPKIAEALVGLGYEEPTPVQRAAIPPLLEGKDVLALAAT
GTGKTAAFSLPLLTRIAEKGRRAGNGPGVLILVPTRELAMQVAEAVHRYGKPLGLQALAV
YGGASMELQVRALRRGVDVVIATPGRAVDHIKRGTLVFDGLSAVVLDEADEMLDMGFAEE
LEAILDATPENKQTALFSATLPPRIGGIAQKHLRQPVHVKVEREVVAEGESARVRQVAYV
VSRAHKMPALARVLDIEQPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQDQRDR
VMQKFRARKVDLLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGREGVAV
TFAEPRENRLLRNIERQTGQKIEIAQVPTVADLRAHRRELVRATLREAVLEGDLESWRGL
VESLAGELDIMDVAAAAVKLVAARSEGEEAEIPAVTPRPDRGGERSFDRGDRGDRGGERG
SREGARDLRGKPIGRESRGATGERSAKPRREPTWQAARLWIGAGRRLKMRPADLVGAIAN
EAGVDASQIGAIQIADGFSTVEVPETIAENVINALRGTKIKGLKVQVRRDRMGR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacggggaagttgggcaggacggggcgacggtgagtgggtttggtgcacttggg
gtgcacccgaagatcgccgaggcgttggtggggctggggtacgaagagcccacgccggta
cagcgggcagccattccgcccctgctggaaggaaaggatgtactggccctcgcggccacg
ggtaccggcaagacggcggcgttttcgctaccgctgctgacgcgcatcgccgagaaggga
cggcgggcgggaaatggccccggtgtgctcatcctggtaccgacgcgtgaactcgcgatg
caggtggcggaagccgtgcatcgctatggcaagccgctgggcttgcaggcgctggccgtg
tacggcggcgcgagcatggagctgcaggtgcgggccctgcgccgtggtgtggacgtggtg
atcgccacgccgggccgcgcggtggaccacatcaagcgcggcacgctggtgttcgacggc
ctttcggccgtggtgctcgacgaagccgacgaaatgctggacatgggtttcgccgaagaa
ctcgaagccattctcgacgccacgccggagaacaagcagacggcgctcttctcggccacg
ctgccgccgcgcatcggtgggatcgcgcagaagcacctgcgtcagccggtgcacgtgaag
gtggagcgcgaagtggtggcagagggtgagtcggcccgtgtgcgtcaggtggcgtatgtg
gtgagccgcgcgcacaagatgcccgcgctggcgcgtgtgctggatatcgagcagcccacc
agtgcgatcgtgttctgccggacgcgtacggaagtggacgagctgagtgagacgctcacc
gcgcgtggtctgcgggcggaagcgctgcacggtggcctgagccaggatcagcgtgaccgt
gtgatgcagaagtttcgtgcgcggaaggtggacctgctcatcgccaccgacgtggcggcg
cgtggtctcgacgtgaagcatgtgagtcacgtggtgaacttcgacgtgccggtggacgcc
gagacgtatgtgcaccgcatcggccgtacgggacgtgcgggccgtgaaggtgtggcggtg
acgttcgccgagccgcgagagaaccgtttgctgcgcaacatcgagcggcagacgggccag
aagatcgagatcgcgcaggtgcccaccgtggcggatctgcgtgcgcatcgtcgtgagctg
gtgcgtgcgacgttgcgtgaagcggtgctcgagggggatctcgaatcgtggcgcggcctg
gtggaatcgctagccggtgagctggacatcatggacgtggccgcggccgcggtgaagctg
gtggccgcgcgcagcgaaggggaggaagccgagatccccgcggtgacgccgcgtcctgat
cgtggcggcgagcgttcgttcgaccgtggtgatcgtggtgatcgtggcggtgagcgcgga
tcgcgtgaaggcgcgcgtgacctgcgtggcaagccgatcggccgtgaaagccgtggcgcg
acgggcgagcgtagcgccaagccgcgccgcgagcccacctggcaggccgcccgcctgtgg
atcggcgccggccgtcgtctcaagatgcgtcctgccgacctggtgggcgcgatcgcgaac
gaggcgggggttgatgcctcacagattggtgcgattcagatcgccgacggattcagcacg
gtggaagtgccggagacgatcgccgagaacgtgatcaatgcgttgcgcgggaccaagatc
aagggtctcaaggtgcaggtgcgccgggatcgtatggggcgctaa
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