Gemmatimonas aurantiaca: GAU_3801
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Entry
GAU_3801 CDS
T00878
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
gau
Gemmatimonas aurantiaca
Brite
KEGG Orthology (KO) [BR:
gau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gau03019
]
GAU_3801 (hrpB)
Enzymes [BR:
gau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GAU_3801 (hrpB)
Messenger RNA biogenesis [BR:
gau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GAU_3801 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
RoxA-like_Cyt-c
ResIII
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAH40843
NITE:
GAU_3801
UniProt:
C1AEB6
LinkDB
All DBs
Position
complement(4467201..4469750)
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AA seq
849 aa
AA seq
DB search
MSRQLTPLPIDSALPELLAALQQRAVAVLEAPPGAGKTTRVPLALLDTSWLGTQRIVMLE
PRRLAARAAATYMARQCGESVGGTVGYRVRGETRVSARTRIEVVTEGVLARLLSADATLD
GYGAVIFDEFHERSLHADLGLALVLETQQQLRAELRVLVMSATLDGDAVAALIADAGGAA
PVVRSAGRMFPVTTHHRASRADERVEATTSRVIREALQDTEGDVLVFLPGAGEQRRVAER
LQGGQDLARVHVHVLHGSMPLAEQDAALAPAPSGWRKVVLSTSIAETSLTVEGVRVVIDV
GLSRIPRFDAAAGLTRLHTVRVSRASADQRRGRAGRTAPGSCYRLWDVHEEHVMPAATRP
EIVDADLSSLALELADAGIGDPLQLRWLDAPKAAPFAAARALLTQLGALDAQGRITPHGK
RMASMPLAPRLAHLLLMAATRGETMAGAAIAALLEERDVLRADGGRPPADLRLRTELLRR
DGDGGTSAGLFGASVDRDATRRARQSMQDLLRRGDFGAVDAKAPWSDDDIGALLALAFPD
RVAQRRSGPEPRYLMRNGSGAILEKRDGLHDAPWLAIAELEGQPPEYRIVRAAPITLEEI
TADFSEQYVREPRAWWDDTTRSVRATLRTTLGALVLEEKPWRDVAADTVRAALITHLQRI
GVDAWPWSDGATRLRERLMFLHRQDVSWPDVSDDALLVSLEEWLGPFLENVRNWSQLESL
DWHEALASLVPWSQRAALDRLAPTHIEVPSGSRIAVDYHDTEAPVLAVKLQECFGWTTTP
TLFDGRVPLTMHLLSPAQRPVQVTRDLAGFWKGSYFEVRKELRGRYPRHPWPDDPLTAVP
TRRAKPRGQ
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgcgccagctcacgcccctgcctatcgacagcgcgcttccggaactcctggctgcg
ttgcagcagcgtgccgtggccgtactggaagcaccacccggtgccggcaagaccacacga
gtgccactggccttgctcgatacgtcgtggcttggcacgcagcgcatcgtcatgctggag
ccgcgccggctcgcggcccgggccgccgccacatacatggcccgtcagtgcggagaatcc
gtaggcggcacggttggatatcgggtgcgcggcgaaacacgcgtctcggctcgtacacgc
attgaagtggtcactgaaggggtgctcgcgcgtctgctgtcggccgatgccacgctcgat
ggctatggtgcggtgatttttgacgagttccatgagcgctcgctgcacgctgatttgggg
ctcgcgctggtgctggagacccagcaacagctccgcgccgagctgcgcgtgctcgtcatg
tcggccacgctcgatggggatgcggtcgcggcgctcattgccgatgccggcggggcagcg
cccgtggtgcgcagtgctggtcgcatgttcccggtcaccacacaccatcgggcatcgcga
gccgacgaacgcgtggaggccacgaccagtcgcgtgattcgggaagcgctgcaggacacc
gagggtgatgtgctggtattcctgccaggggccggtgagcaacggcgggtggcggaacgc
ctgcagggcggtcaggatctcgcgcgagtgcatgtgcacgtgctgcatggcagcatgccg
ctggccgagcaggatgccgcgctcgcgccagctccttcggggtggcgcaaggtcgtgttg
agcacgagcatcgccgaaaccagtctgacggtggaaggcgtgcgggtggtgatcgatgtc
gggctgtcgcgcattccgcgtttcgatgccgccgcaggactgacgcgactgcacacggtg
cgggtgagtcgcgcgtcggccgatcaacgccgaggacgtgccgggcgcaccgctcctggc
agttgctatcggctgtgggacgtgcacgaagaacatgtgatgcccgctgcgacccgtccc
gagattgtcgacgccgatctgtcgtcgttggcgctggagctggcggatgccggcatcggt
gacccattgcagttgcggtggctcgacgcgccaaaagccgcgccgtttgcggcggcacgc
gcgctgctgacacaactgggggccctcgatgcacagggacgtatcacgccgcatggcaag
cgcatggcttccatgccactcgcaccacgcctcgcgcatctgctgctcatggcggccacg
cgtggtgaaacaatggccggtgcggctatcgcggcgctgctggaggaacgcgatgtgctg
cgtgccgacggcggacggccaccggccgacctgcgattgcgcaccgagttgctccgtcgt
gatggcgacgggggcacatcggccgggctgttcggagccagtgtcgatcgagatgcgacg
cgtcgtgcgcggcagagcatgcaggacctgctccggcgcggagactttggtgccgtcgac
gccaaggcgccgtggtcggacgacgatatcggtgcgctgctggccttggcatttcccgat
cgggtggcgcagcgacgcagtggtccggagccgcgctatctgatgcgcaacggcagtggt
gcgatcctggagaaacgcgacggattgcacgatgcgccttggctggccatcgccgaactg
gaaggccagccgcccgagtatcgcatcgtgcgtgccgcgccgatcaccctcgaggagatc
acggccgatttttccgagcagtacgtgcgtgaaccacgcgcctggtgggacgacaccacg
cggtcggtccgcgcgacactgcgcaccacactcggcgcgctcgtgctcgaggaaaagccg
tggcgtgatgtggcggccgataccgtgcgggccgcgctcatcacacacctccagcgcatc
ggagtggatgcgtggccgtggtcggatggcgcgacgcggctgcgcgaacgattgatgttc
ctgcatcgtcaggatgtgtcgtggcccgacgtgtccgacgacgcgctgctggtgtcactc
gaggaatggcttggtcccttcctcgaaaacgtgcgcaactggtctcagctcgaatcgctg
gactggcacgaggcgttggcgtcgctggtgccctggtcgcaacgcgcggcactcgatcgc
cttgcaccgacccacatcgaagtccccagcggctcgcgcattgccgtggactaccacgac
accgaggcgccggtgctggccgtgaagctgcaggagtgtttcggctggaccaccacgccc
acattgttcgatggacgggtgccactcaccatgcacctgctgtcaccggcacaacgaccg
gtgcaggtgacgcgtgatctcgccggcttctggaagggtagctacttcgaagtgcgcaaa
gagctgcgcggacgctatccgcggcacccttggcctgatgatccactcacggccgtcccc
acgcggcgcgccaagccaagagggcagtag
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integrated database retrieval system
